Skip to content

Search Archives

Search tips
from:Name Search by author name, e.g. from:Duncan Murdoch "exact phrase" Match an exact phrase word1 word2 Match messages containing both words Date range Use the date pickers to filter results to a time period

Use the list dropdown to narrow results to a specific mailing list. Combine from: with other terms to filter by author and content.

425 results for “from:James Pustejovsky”

[R-meta] Meta-analysis including multiple intervention arms
James Pustejovsky · Nov 15, 2020 · r-sig-meta-analysis

It depends on the structure of the random effects (i.e., the ?working model? in the RVE framework). If one used a model with independent random effects for each ES estimate, then yes, increased heterogeneity would mean that the study...

[R-meta] Calculate individual SDs from ES's SDs
James Pustejovsky · Feb 26, 2018 · r-sig-meta-analysis

I would hazard a guess that the +/- 0.07, which is described as "SD", might actually be the standard error of the effect size estimate. So in the example, ES = 1.38 and sampling variance = 0.07^2 = 0.049...

bug in nlme::getVarCov
James Pustejovsky · Aug 11, 2016 · r-devel

Greetings, I noticed a bug in the getVarCov function from nlme. I am posting here because it is not currently possible to register and file a report through https://bugs.r-project.org/. (If this is not the appropriate venue...

[R-meta] clubSandwich for variance components
James Pustejovsky · Aug 30, 2021 · r-sig-meta-analysis

Hi Stefanou, clubSandwich provides standard errors, hypothesis tests, and confidence intervals for regression coefficient estimates (for meta-regressions and an array of other types of linear, generalized linear, and linear mixed effects models). It does *not* adjust variance component estimates...

[R-meta] online seminar series
James Pustejovsky · Oct 20, 2021 · r-sig-meta-analysis

Hi Danka, It's possible that we missed your first registration because of the issue with the Google Form that you noted. Here's the correct link to register: https://docs.google.com/forms/d/e/1FAIpQLScGX-GOm1nn93sj67_LF7MnngcFrOoOOcRS2cNsbgcw9-ujbg...

[R-meta] prediction intervals in multi-level meta-analysis models
James Pustejovsky · Apr 14, 2021 · r-sig-meta-analysis

Dear meta-analysis folks, I am using metafor to fit a multi-level meta-regression model. I want to generate an 80% prediction interval for the effect size in a new study with a given set of characteristics. Here's...

[R-meta] selection models in metafor with step truncation
James Pustejovsky · Aug 2, 2024 · r-sig-meta-analysis

Hi Wolfgang, I see in the metafor documentation for selmodel ( https://wviechtb.github.io/metafor/reference/selmodel.html#half-normal-negative-exponential-logistic-and-power-selection-models) that the half-normal, negative exponential, logistic, and power curve selection models can...

Cluster-robust SEs & random effects -- seeking some clarification
James Pustejovsky · Aug 15, 2022 · r-sig-mixed-models

> > > When you note, 'if you trust the specification of your random effects > structure' can you elaborate on this? I imagine in the extreme, no random > effects structure will ever truly be perfect, so I guess it comes down to > some...

[R-meta] Separate tau for each subgroup in mixed-effect models
James Pustejovsky · Aug 31, 2022 · r-sig-meta-analysis

Hi Arthur, Yes, these sorts of models are now supported in metafor::rma.uni(). For details, see https://wviechtb.github.io/metafor/reference/rma.uni.html#location-scale-models For a sub-group analysis with a categorical moderator called `mod...

corAR1() structure in lme()
James Pustejovsky · Feb 12, 2020 · r-sig-mixed-models

Hello, I am writing some additional functionality for lme objects, and I have a question about how lme() handles corAR1() structures. I noticed that sometimes, if I specify a model with corAR1(), the fitted model has a corStruct of class...

[R-meta] sd of blups vs tau in RE model
James Pustejovsky · Jun 29, 2023 · r-sig-meta-analysis

> 1. Would you like to explain a bit "the SD of the BLUPs is not the > same thing as the SD of the population distribution". Conceptually, I > thought they are the same - both representing the marginal distribution > after accounting for...

[R-meta] Replicating robumeta package output by metafor package in R
James Pustejovsky · Nov 4, 2019 · r-sig-meta-analysis

Reza, Both packages use the same method to calculate standard errors and covariances for meta-analytic average effect size estimates and meta-regression coefficients. However, the packages implement different estimation methods for between-study heterogeneity and they use different weighting...

[R-pkg-devel] Is using global assignment in package tests allowed?
James Pustejovsky · Jan 27, 2022 · r-package-devel

But I am not using global variables at all in the package code (in /R)---only for unit testing. Is this distinction relevant? Or do I need to avoid global assignment even in the unit tests? On Thu, Jan 27...

new package clubSandwich: Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections
James Pustejovsky · Jul 27, 2016 · r-packages

Dear R users: I'm happy to announce the first CRAN release of the clubSandwich package: https://cran.r-project.org/web/packages/clubSandwich clubSandwich provides several variants of the cluster-robust variance estimator for ordinary and weighted least squares...

[R-meta] catching errors in batch meta-analyses
James Pustejovsky · Aug 16, 2021 · r-sig-meta-analysis

I find the functions safely() and possibly() from the purrr package for this sort of error handling stuff. For instance, create safe_reitsma <- safely(mada::reitsma) Then run X_mada <- safe_reitsma(data=subset(X,SUBMA_num==iii), correction.control...

[R-meta] Computing treatment effects with 95%CI from a meta-regression output
James Pustejovsky · Sep 6, 2020 · r-sig-meta-analysis

That makes sense. RVE won't work and is not appropriate if you only have a single study falling into a given category. For it to work, there need to be multiple independent studies that contribute effects to a given...

[R-meta] RVE: degrees of freedom < 4
James Pustejovsky · Dec 13, 2021 · r-sig-meta-analysis

Hi Catia, The issue is with drawing inferences. When the degrees of freedom are low (less than 4, say), the point estimates and the sampling variance estimates should still be unbiased (or close to unbiased, for the sampling variances). However...

[R-meta] sd of blups vs tau in RE model
James Pustejovsky · Jun 29, 2023 · r-sig-meta-analysis

The approximations there are predicated on k (the number of studies) being large enough that the estimated heterogeneity (tau-hat) converges to the true heterogeneity parameter. On Thu, Jun 29, 2023 at 11:29?PM Yefeng Yang <yefeng.yang1 at...

new package clubSandwich: Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections
James Pustejovsky · Jul 27, 2016 · r-help

Dear R users: I'm happy to announce the first CRAN release of the clubSandwich package: https://cran.r-project.org/web/packages/clubSandwich clubSandwich provides several variants of the cluster-robust variance estimator for ordinary and weighted least squares...

[R-meta] Egger-type test for multi-level meta-analysis
James Pustejovsky · Jun 19, 2023 · r-sig-meta-analysis

Correct. The slope on sqrt(vi) indicates an association between SE and effect size. The intercept is a "PET"-style estimate of the average effect size in a population of infinitely large studies (i.e. SE = 0). James On Mon...

Can't find what you're looking for? Try searching with Google .