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692 results for “from:Jari Oksanen”

Displaying estimators from specpool or estimateR
Jari Oksanen · Jan 21, 2011 · r-sig-ecology

On 21/01/11 17:02 PM, "Martin Unterseher" <martin.unterseher at uni-greifswald.de> wrote: > \begin{figure} > <<fig=true>>= > pool.test<-poolaccum(test) > plot(pool.test) > @ > \end{figure} Martin, You should set echo=false in Sweave so that your...

The hidden costs of GPL software?
Jari Oksanen · Nov 23, 2004 · r-help

On Tue, 2004-11-23 at 17:40, roger koenker wrote: > Having just finished an index I would like to second John's comments. > Even as an author, it is difficult to achieve some degree of > completeness and consistency. > > Of...

cca
Jari Oksanen · Dec 20, 2013 · r-sig-ecology

On 20/12/2013, at 10:15 AM, Mahnaz Rabbaniha wrote: > Dear all > > I have done cca in vegan package, > > bio file are the zooplankton genus > m file is the hydro biological groups > > > vare.cca <- cca(bio,m) > >> plot(vare...

cat with backspace and newline characters
Jari Oksanen · Nov 7, 2013 · r-devel

On 07/11/2013, at 09:35 AM, Renaud Gaujoux wrote: > I agree that the handling of \b is not that strange, once one agrees > on what \b actually means, i.e. "go back one character" and not > "delete previous...

Flipping axis 1 in CCA plot - vegan
Jari Oksanen · Feb 16, 2011 · r-help

esgarbanzo <jcram <at> uw.edu> writes: > > > Hello, > I've successfully run my CCA and the ordination is not displayed quite > right. Is it possible to flip the x-axis (ie., make it a mirror image of > itself)? > Howdy, I don...

R works on Fedora Core 3
Jari Oksanen · Nov 9, 2004 · r-help

On 9 Nov 2004, at 19:44, Jonathan Baron wrote: > The RPM for Fedora Core 2 seems to work just fine on Core 3. > > (The graphics window got smaller, but I'm sure there is a setting > for that.) > That...

How about a mascot for R?
Jari Oksanen · Dec 8, 2004 · r-help

On Wed, 2004-12-08 at 17:01, Jari Oksanen wrote: > > I just wait for someone jumping off and saying this is off-topic and you > should stop posting to this list -- and I'm afraid it could happen just...

How about a mascot for R?
Jari Oksanen · Dec 8, 2004 · r-help

On Wed, 2004-12-08 at 17:01, Jari Oksanen wrote: > > I just wait for someone jumping off and saying this is off-topic and you > should stop posting to this list -- and I'm afraid it could happen just...

A long digression on packages
Jari Oksanen · Jun 5, 2005 · r-help

On 5 Jun 2005, at 16:47, Duncan Murdoch wrote: > Thanks for posting this; I think you raise good points, but they're > more appropriate for R-devel, so I've posted my reply there. > There are diverse opinions about...

how to calcualte Jaccard Coefficient
Jari Oksanen · Mar 25, 2009 · r-help

Greg <chaoborid <at> gmail.com> writes: > > You could try 'vegdist()' in the 'vegan' package. > > Yep, you could. However, if you want to have Jaccard for binary data although your data are not binary, you must set binary = TRUE in vegan...

MDS with missing data?
Jari Oksanen · Jun 15, 2006 · r-help

On Thu, 2006-06-15 at 07:13 +0300, Jari Oksanen wrote: > > > > 1) use nonmetric/gradient descent MDS which seems to > > allow missing data, or > > > Not the isoMDS function in MASS. if N(N-1) is a problem, then nonmetric...

Cluster Analysis
Jari Oksanen · May 19, 2011 · r-sig-ecology

On 19/05/11 20:20 PM, "Francisco Cabrera Rodriguez" <fffcccrrr at yahoo.com> wrote: > I would like > to perform a cluster analysis to data of presence absence. > Which distance > and group linkage methods are best? Francisco, Nobody knows. Honestly...

MASS: isoMDS drops names of points in R-2.1.0 (PR#7786)
Jari Oksanen · Apr 12, 2005 · r-devel

Full_Name: Jari Oksanen Version: 2.1.0 OS: Linux & MacOS X Submission from: (NULL) (130.231.102.145) isoMDS (MASS) drops names of points. The reason seems to be that R-2.1.0 abandoned names.dist that isoMDS...

New to OS X - from where to install R?
Jari Oksanen · Sep 29, 2013 · r-sig-mac

On 19/06/2013, at 12:40 PM, Rainer M Krug wrote: > Hi > > I am completely new to OS X (linux user up to now)- so please excuse my > ignorance. > > What is the best way to install R on OS...

metaMDS NMDS: use of alternative distances?
Jari Oksanen · Oct 16, 2009 · r-help

Kim Vanselow <Vanselow <at> gmx.de> writes: > > Dear r-helpers! > How can I integrate other distances (in the form of a dist object) into function metaMDS? The problem: > metaMDS needs the original data.frame for the calculation and only the...

Uses of isoMDS()
Jari Oksanen · Jun 6, 2005 · r-help

On Mon, 2005-06-06 at 10:34 -0500, Ross Clement wrote: > Thanks to all for both the public and private answers on this topic. It > looks like from your answers that I'll have to wait for "Modern Applied...

metaMDS vs. isoMDS for NMDS
Jari Oksanen · Mar 8, 2011 · r-sig-ecology

On 8/03/11 17:05 PM, "Stephen LeDuc" <sdleduc at gmail.com> wrote: > Dear R listserve members, > > Does anyone have any thoughts or advice regarding using "metaMDS" versus > "isoMDS" functions for conducing NMDS in R? Is one clearly preferred...

error of betadiver in vegan
Jari Oksanen · Jul 11, 2013 · r-help

Elaine Kuo <elaine.kuo.tw <at> gmail.com> writes: > > Hello, > > I am using betadiver (vegan) to calculate beta diversity. > However, an error message shows > > Error in ifelse(x > 0, 1, 0) : > (list) object cannot be coerced to type 'double' ...snip...

Vector overlays on nmds ordination
Jari Oksanen · Nov 2, 2010 · r-sig-ecology

On 2/11/10 19:34 PM, "Wade Wall" <wade.wall at gmail.com> wrote: > Thanks all, > > That was exactly what I was looking for. > Wade, Fine if you found what you were looking for. Please note that vegan envfit...

INDVAL and mvpart
Jari Oksanen · Aug 9, 2005 · r-help

Agnieszka, Package 'mvpart' is documented. In this case, ?rpart.object explains *where* in the rpart object is the membership vector. cheers, jari oksanen On Mon, 2005-08-08 at 16:02 +0200, astrzelczak at ps.pl wrote: > Hi, > > I'd...

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