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207 results for “from:Michael Bedward”

Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function
Michael Bedward · Sep 16, 2010 · r-help

Cool. If you get some code working and don't mind sharing it please post it here. Michael On 17 September 2010 16:49, Sunny Srivastava <research.baba at gmail.com> wrote: > Thanks Michael for your help. At least its...

create a pairwise coocurrence matrix
Michael Bedward · Nov 11, 2010 · r-help

On 12 November 2010 02:21, David Winsemius <dwinsemius at comcast.net> wrote: > >> The fastest and easiest solution is >> >> ?t(A) %*% A > > That is really elegant. (Wish I could remember my linear algebra lessons as > well from forty years ago...

How to building my own datafile
Michael Bedward · Aug 11, 2010 · r-help

Hi Stephen, If you are working with just a single file (database table) or a small number I'd suggest you look at the RSQLite package. It will probably do everything you want and there is good tutorial info available...

(no subject)
Michael Bedward · Nov 20, 2010 · r-help

Type data() to list the numerous example data sets included with the standard R distribution. Michael On 20 November 2010 20:42, Stephen Liu <satimis at yahoo.com> wrote: > Hi folks, > > Please advise where can I down free data files...

weighted x variables with glm
Michael Bedward · Nov 28, 2010 · r-help

>> In case you haven't see it, the glm function accepts an optional >> weights argument. >> > > Thanks for the reply. But the philosopy behind weighting is the assumption > of unequal variance in the y values. In normal regression one assumes that...

Object oriented programming in R.
Michael Bedward · Sep 14, 2010 · r-help

Hello, I think you will have to specify your requirements (or at least area of interest) in much greater detail to get any very meaningful input from people here. Meanwhile there are countless examples of object-oriented programming using R...

Converting tables to matrices
Michael Bedward · Sep 16, 2010 · r-help

Oops, that should have been result[[1]], not results[[1]] On 17 September 2010 15:03, Michael Bedward <michael.bedward at gmail.com> wrote: > Hello Selthy, > > Here's one way. Assume your tables are called x.trt and x.cont...

Asking Favor
Michael Bedward · Sep 21, 2010 · r-help

Hi Chuan, I'm forwarding your question to the list because I haven't used the rimage package... It's best if you post questions to the list anyway because you are more likely to get a fast and useful...

accumulation curves
Michael Bedward · Sep 22, 2010 · r-help

Hello Kyran, Some more details of your data would be helpful. For example, is it cumulative species count over time ? Michael On 23 September 2010 15:05, Kyran Staunton <staunton.k at gmail.com> wrote: > Hi, > > I am trying to...

drawing samples based on a matching variable
Michael Bedward · Sep 28, 2010 · r-help

On 29 September 2010 09:47, Remko Duursma wrote: > > > How about: > > y[y[,2] %in% x.samp[,2],] > > gives you the subset of y where values in the second column are restricted > to your sample from x. > > You can then...

Bayesian Belief Networks
Michael Bedward · Dec 23, 2010 · r-help

Hello Walt, Have a look at the bnlearn and deal packages. Michael On 24 December 2010 01:29, Data Analytics Corp. <walt at dataanalyticscorp.com> wrote: > Hi, > > Does anyone know of a package for or any implementation of a Bayesian...

how to eliminate an element of a list
Michael Bedward · Aug 13, 2010 · r-help

Hello Andr?, > I want to eliminate an element of a list: > > list <- seq(1,5,1) That's not a list, it's a vector > s <- sample(list,1) > > lets say s=3 > Now I want to remove 3 from...

Vector
Michael Bedward · Nov 12, 2010 · r-help

Fancy that... vector spam :) Michael On 12 November 2010 20:30, Jeff Musgrave <jeff at teamteach2.com> wrote: > Now you and your Vector Team can make more money. > Offer your current client base a chance to buy and sell > a...

Odp: Pausing script to allow user input from keyboard.
Michael Bedward · Aug 6, 2010 · r-help

I'm having problems with your method Petr. I seem to get an additional prompt. Example... f <- function() { cat("\n", "Enter a string:", "\n") s <- scan(n=1) cat("\n", "You entered", s, "\n") } Running f() produces... Enter a string...

Two-Way Joining or Clustering
Michael Bedward · Oct 21, 2010 · r-help

Hi Muhammad, Have a look at the biclust package... http://cran.r-project.org/web/packages/biclust/index.html Michael On 21 October 2010 18:00, Muhammad Yaseen <myaseen208 at gmail.com> wrote: > *Hi Folks,* > * > * > *I want to do two...

Creating R objects in Java
Michael Bedward · Oct 3, 2010 · r-help

Have you looked at JRI ? http://www.rforge.net/JRI/ Michael On 4 October 2010 09:29, lord12 <trexinsd at yahoo.com> wrote: > > It seems that you can call Java objects from R but that you cannot call R > objects...

Creating vectors
Michael Bedward · Aug 11, 2010 · r-help

Here's another way... x <- c(2,2,4,6,2,4,4,6,8,6) match(x, unique(x)) Produces... [1] 1 1 2 3 1 2 2 3 4 3 On 12 August 2010 01:48, clips10 <m...

weighted x variables with glm
Michael Bedward · Nov 28, 2010 · r-help

Hi Wendy, In case you haven't see it, the glm function accepts an optional weights argument. Michael On 29 November 2010 09:42, Wendy Anderson <newhorizonscandelo at gmail.com> wrote: > I have a glm regression (quasi-poisson) of log...

Help me pls
Michael Bedward · Sep 23, 2010 · r-help

The postscript function ? On 23 September 2010 17:12, Seyit Ali KAYIS <skayis at selcuk.edu.tr> wrote: > Dear All, > > I need to create eps file which is the required figure format ?of the > journal that I want to submit...

drawing dot plots with size, shape affecting dot characteristics
Michael Bedward · Aug 11, 2010 · r-help

Try running this and see if it does what you want. It just uses plain old plot with the cex arg for size and the col arg for colour... greyDots <- function() { # make up some data x <- runif(50, 0, 10...

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