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Hello all, Recently, a package I submitted to Bioconductor failed with an error message in the Windows system: ERROR: dependencies 'DESeq2', 'MultiAssayExperiment', 'SummarizedExperiment' are not available for package 'animalcules'. This is the link for the build: http://bioconductor.org/checkResults...
Hi list, As title, under windows, the method of ~/.inputrc won't work, is it possible to let Rterm be vi style on windows? P.S. I've sent it serveral days ago, get no response, so I send it...
Dear developer community, There seems to be an error in the nightly build of my package `RIPSeeker' (0.99.8) on the Mac OS X Leopard (10.5.8) / i386 (petty) (message pasted below). The error occurs in the Vignette...
Hello developers, Recently I got an error in the devel-branch test: http://bioconductor.org/checkResults/devel/bioc-LATEST/animalcules/malbec2-checksrc.html It works just fine in the current bioc version, and the error says: "non-numeric argument to...
Dear List, After updating to R 3.10 and Bioconductor 2.14, I'm having a rather frustrating error whenever I try using function like cairo_ps to save eps figures as demonstrated in the following example: cairo_ps('test...
Dear List, After updating to R 3.10 and Bioconductor 2.14, I'm having a rather frustrating error whenever I try using function like cairo_ps to save eps figures as demonstrated in the following example: cairo_ps('test...
Fixed! Thanks a lot! On Apr 17, 2014, at 10:13 PM, Simon Urbanek <simon.urbanek at r-project.org> wrote: > > On Apr 17, 2014, at 9:56 PM, Yue Li <gorillayue at gmail.com> wrote: > >> Dear Simon, >> >> I saw...
Dear colleagues, We just published a package, "interplot", in CRAN. It can be used to plots the conditional coefficients ("marginal effects") of variables included in multiplicative interaction terms for various models. The installation instruction and more details about the package...
I have a vector whose length is nearly 70 thousand. I need randomize it for 1000 times . for randomizing , I mean ,the elements of the vector remain intact while their order in the vector get changed randomly. I have written...
Dear List, I wonder if anyone worked on incorporating CULA tools library functionality into Rcpp. How much speed gain on top of Rcpp do we expect on basic operation like matrix multiplication? In particular, I?m currently usnig RArmadillo to...
Hi, I have been using ffsave.image() to save mixture of ff and normal objects in my workspace. e.g. ffsave.image(file = "C:\output\saveobjects", rootpath = "D:\fftempdir", safe = TRUE) It works fine but once my workspace has large...
Hello, I encountered a problem when running ?R CMD check ?as-cran? at the step ?checking CRAN incoming feasibility?. The error message is as follows: * checking CRAN incoming feasibility ...Warning in read.dcf(con, c(.get_standard_repository_db_fields...
Dear List, This is probably a dumb question: Is there an easy way to convert Rcpp code to pure cpp code to build a command line tool? I was thinking about something similar to the 'python setup.py install? thing...
Hi, list, I'm using Rterm on windows, I find that when I try to complete the code with <tab>, the rest of the input from cursor will be wiped out. How to reproduce(`|' means the cursor position): > write.table...
Hi, there Since glm cannot handle factors very well. I try to use bigglm like this: logit_model <- bigglm(responser~var1+var2+var3, data, chunksize=1000, family=binomial(), weights=~trial, sandwich=FALSE) fitted <- predict(logit_model, data) only var2 is...
Dear colleagues, We just published a package, "interplot", in CRAN. It can be used to plots the conditional coefficients ("marginal effects") of variables included in multiplicative interaction terms for various models. The installation instruction and more details about the package...
Dear List, I wonder who have encountered and/or solved the following issue where cairo_ps stopped working due to failure to load cairo.so module after installing Yosemite. Thanks a in advance, Yue > cairo_ps("~/Desktop/test.eps") Warning...
Dear friends: I am a new R user, and not very good at statistics and maths I find it difficult to find the minimum of this item: ((p*(b-1)-1)*(p+1)^(b-1)+1)/p^2 It seems...
Hello Bioc Community, The CHECK in the windows server throws an error message that is not seen in other platforms and local windows computer: Error: .onLoad failed in loadNamespace() for 'Cairo', details: call: library.dynam("Cairo", pkgname, libname) error: DLL...
Hello there, I am working to update the flowGraph package on Bioconductor and I keep getting an error about a missing namespace for the following code (namely ".I" for specifying the row in data.table): dt <- data.table::as.data...
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