Search Archives

Hi, Even if the BioC 2.1 release is practically ready for download, we've decided to wait until Monday (Oct. 8) to make the official announcement. This will give us more opportunity for testing and polishing the release. Also...

Henrik Bengtsson wrote: >> source("http://www.bioconductor.org/biocLite.R") >> > Error in file(file, "r", encoding = encoding) : > unable to open connection > In addition: Warning message: > cannot open: HTTP status was '403 Forbidden' > > This happens both from the US and from...

On 05/03/2016 06:05 AM, Jeff Newmiller wrote: > Isn't that just an inefficient way to do > > "age" == x Yep, it's an inefficient way to do which(x == "age"). H. > > ? > -- Herv? Pag?s Program in Computational Biology...

Hi developers, Our next release is just around the corner. BioC 2.5 is planned to be released tomorrow Wednesday (Oct 28). In order to prepare for this release, we need to create a branch in SVN to hold the...

Prof Brian Ripley wrote: > The updating of gettext support is currently in mid-progress (and > specifically what is required for MacOS X). It looks as if your > system has another version of gettext installed: please configure R > not to use...

Hi, > z <- (-1:3)+2i > names(z) <- LETTERS[1:5] > z A B C D E -1+2i 0+2i 1+2i 2+2i 3+2i Nice :-) > names(z)[2] <- "long name" > z A long name C D E -1...

That's a nice improvement. Thanks! H. Prof Brian Ripley wrote: > On Wed, 1 Feb 2006, Herve Pages wrote: > >> With recent versions of R-devel, "R CMD check" complains about >> some "Rd files with unknown sections". > > > It is new test...

Parlamis Franklin wrote: >When the following statement: > > dbSendQuery(MySQL.Connection, "source ~/MySQLFiles/DateTable.sql") > > > As Douglas said, "source" is not an SQL statement. Remember, MySQL is a client/server RDBMS. The client (your R program) and the server can be...

Hi developers, Due to some technical problems with the build system, there will be no new build report today for the BioC 3.10 software builds. Sorry for the inconvenience. H. -- Herv? Pag?s Program in Computational Biology Division of...

Hi, According to seq_along man page, 'seq_along(x)' is equivalent to 'seq_len(length(x))' but apparently not if 'x' is an S4 object with a defined "length" method: > seq_along(letters[11:15]) [1] 1 2 3...

Herve Pages wrote: ... > But if, instead of the above, I do this: > > > for (i in nrow(dat)) { row <- sapply(dat, function(col) col[i]) } Should have been: > for (i in 1:nrow(dat)) { row <- sapply(dat, function(col) col[i...

Hi, I found that displaying a raw vector with long names is not as pretty as for other types of named vectors: > r <- charToRaw("Mz") > r [1] 4d 7a > names(r) <- c("M", "zzzzzz") > r M zzzzzz 4d 7a The...

Hello BioC package maintainers, We are about to create the BioC 2.1 release branch in svn. We will do this in about 1 hour. Please, do not try to commit any change to your packages for the next 1...

Not for months, only since last week. They should be back in the next 12-18 hours. Thanks for reporting this. Cheers, H. On 19/03/2023 11:00, Luo Weijun wrote: > Dear BioC team, > I noticed that download stats...

On 22/09/2025 16:03, Herv? Pag?s wrote: > Please refer to the daily build reports for more information about the > errors: > > - daily report for BioC 3.22 (devel): > https://bioconductor.org/checkResults/3.22/bioc-LATEST/ > > - semiweekly report...

Hi everybody, I'd like to report this problem I have on Windows with R 2.2.1, R 2.3.0, R-2.3.0 patched (r38086) and R 2.4.0 devel (r37925): D:\hpages>R\bin\R...

On 5/31/19 08:41, Toby Hocking wrote:... > In my opinion install.packages should stop with an error (instead of a > warning) if this happens. Totally agree with that. Best, H. -- Herv? Pag?s Program in Computational Biology Division...

On 2/16/21 4:39 PM, Martin Morgan wrote: > Binary packages are installed, but unlike source packages R does not try to load them after they are installed, somehow assuming that the installation was correct. Note that this assumption...

Herv? Pag?s wrote: [...] > The build/check results for BioC 2.5 (the new release) are here: > > http://bioconductor.org/checkResults/2.6/bioc-LATEST/ > > The build/check results for BioC 2.6 (the new devel) are here: > > http://bioconductor...

Hi Colin, Colin A. Smith wrote: > Packages with 0.99.z version numbers (where z is an integer) > automatically get promoted to 1.0 for release, according to the > standard: > > http://wiki.fhcrc.org/bioc/Version_Numbering_Standards > > Is this...