Search Archives

Many thanks Duncan, I tried to look into the code but didn't manage to advance much due to some java configuration issues. To prevent being flooded by content of old versions I added a filter to only repost those...

Dear list, Recently after a package update I noticed an ERROR on one flavor. I believe this is some problem with the r-release-macos-x86_64 flavor. But I'm not sure if this is fixed on the system...

Dear Scott, Sorry for not answering the first time you asked. I thought someone else would give you some feedback but I guess no one did it off-list. How is this specific palette different from other palettes existing on...

Hi Rory, There was a recent change in R devel ( https://cran.r-project.org/doc/manuals/r-devel/NEWS.html): - sessionInfo() records (and by default prints) the system time zone as part of the locale information. It was reported...

Dear list, Checks of the package BaseSet I maintain are failing on r-devel with: Error in UseMethod("tidy") : no applicable method for 'tidy' applied to an object of class "GeneSet" Calls: tidy Execution halted Surprisingly, similar code on tests...

Dear all, I am currently working with the spatstat package, using windows and pixel images. First: My aim is to transform a shapefile (see attached) into a pixel image. My idea is to start transforming the shapefile into a Spatial...

Dear all, I am currently working with the spatstat package, using windows and pixel images. First: My aim is to transform a shapefile (see attached) into a pixel image. My idea is to start transforming the shapefile into a Spatial...

Dear Uwe and the CRAN team, Many thanks for maintaining the package for so long (>10 years!). I see the latest changes are in some internal C code related to updating the libxml2 library. In CRAN's experience, is this...

Hi all, I have recently been researching how available.packages and install.packages filter packages from repositories with additional fields in their PACKAGES file. Currently there are some default filters, but users (and R admins) can set up their own...

Greg, If the problem is in your local checks you can add _R_CHECK_SYSTEM_CLOCK_=FALSE to your .Renviron to omit that check. See R internals (which documents CRAN's default too) [1]. Best, Llu?s [1]: https://cran...

I too share the positive feelings about this effort. The detailed explanations clearly helps me learn, regardless of the fact that sometimes the answer is not the desired one. It keeps up my spirit to collaborate, especially on those that...

Hi Francesco, You reached the right list. Congratulations on getting this far, it is not always easy to fix all the R CMD checks and BiocChecks. If these packages are optional, they should be used conditionally: if (requireNamespace("pkg", quietly...

Great work and happy new year!! I checked both RSS feeds and the random links I tried all point to the home page of Bioconductor. I am unsure if the links in the feed should point to a section on...

Dear Michael, The error means that length(which(cond)) > 1 I think this is a bug on BiocCheck on the internal function .getTokenTextCode (findSymbols.R L12 <https://github.com/Bioconductor/BiocCheck/blob/222e4693a947673ef16d9e6982e7f1c14e2c705f/R/findSymbols.R#L12> ). It checks if...

Hi, I can't read any vignettes of gcplyr in Firefox 109.0.1 from a Windows 10. But sorry, I don't have any solution. On Thu, 9 Feb 2023 at 21:18, Duncan Murdoch <murdoch.duncan at gmail...

Hi Daniel, I found ggsurvfit in a dashboard of the submission process under the publish folder (https://r-hub.github.io/cransays/articles/dashboard.html) . CRAN volunteers haven't published it yet, and will probably do so soon. To contact...

Dear Uwe, I would like to outline three key reasons, in increasing order of importance, for my proposal: 1) The current documentation does not fully reflect actual repository practices. The available documentation suggests that available.packages provides "details corresponding to...

Yes, I think that would be enough. Thank you, Kurt! Llu?s On Wed, 12 Jun 2024 at 16:35, Kurt Hornik <Kurt.Hornik at wu.ac.at> wrote: > >>>>> Llu?s Revilla writes: > > Lluis, > > So in available.packages() I could...

Hi Ivan, Thanks for the careful investigation. I didn't notice that tidy was masked! I expected that a delayed registration could prevent the error. But I think I made a bad decision when I defined tidy and I will...

Hi Matej, Usually when I find this kind of message it indicates that the package is installed in different libraries and you are updating in just one library. Have you checked that it is installed in multiple libraries? I usually...