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hi all, Prior to this post I asked a question how to deal with binary clustered data when the crosstab by variables shows an empty cell. I figured out later that such an empty cell corresponds to what is called...

hi Ozgur, Thanks for your reply! by "empty cell" I mean there was a condition in which all participants showed the same response (let's say response A). In other words, the probability of A, according to the present data...

Dear friends : using the "glm" function and setting family=binomial, I got a list of coefficients. The coefficients reflect the effects of predicted variables on the probability of the response to be "1". My response variable consists of "A" and...

Hello! I tried to sign up as a maintainer for my first Bioconductor package. However, I can not get the confirmation email. Even though I'm able to log in at https://support.bioconductor.org/accounts/signup/, I always get...

Dear list, I just submitted a new package. It builds and checks OK on the Mac and Linux servers but fails to build on the Windows server, namely 'mosacto1'. The error says: * checking package dependencies ... ERROR Package suggested but not...

So it seems that I've hit the 4GB zipfile limit. However, even if I set compress = FALSE, it still tries to compress, and hence fails. YS On 2/11/10, Yue Sheng <yuesheng8 at gmail.com> wrote: > Hi, I...

Dear all: I did the following because I was not sure what a logistic regression fits ."small.glm" is a glm fit , setting the family to be binomial. >fitted(small.glm)->p >log(p/(1-p))->left > for(i in...

Hi all, My data are binary and within-subject correlated; there are three factors of interest and two of them are within-subject. So, I have considered modelling the data using a binomial regression with a GEE approach (which can...

Dear bioc team, Hello, could you please help me take a look at the following two questions I met? Question 1: I have tried multiple times to subscribe to the bioc-devel list by filling out the web form (https...

Thanks for the quick insightful replies! I will look into the solutions and keep the list posted on any progress on this end. Yue > On May 16, 2015, at 12:10 PM, Dirk Eddelbuettel <edd at debian.org> wrote: > > > On...

Dear Bioconductor team, I have received package building error for scFeatures https://master.bioconductor.org/checkResults/3.18/bioc-LATEST/scFeatures/nebbiolo2-checksrc.html It seems it is building on the RELEASE_3_18 branch. I have pushed everything to...

my function is glm(a~log(b)+c+d+e,family=binomial,data=f)->aa I want to extract the original data set of aa. How to do it ? You may suggest the model.frame() function. In fact ,i have...

Hi all, I'm trying to define and log-likelihood function to work with MLE. There will be parameters like mu_i, sigma_i, tau_i, ro_i, for i between 1 to 24. Instead of listing all the parameters...

Thank you very much. I do overlook something..... On Thu, May 31, 2012 at 5:20 PM, Thomas Lumley <tlumley at uw.edu> wrote: > On Fri, Jun 1, 2012 at 1:17 AM, Yue Guan <pipehappy at gmail.com> wrote...

Thanks, Michael. I saw this error in the bioC 3.9 package building step for my package, so I'm not sure how to specify the S4Vector version in that. On Tue, Mar 26, 2019 at 1:35 PM Michael...

Dear Bioconductor team, No worries, problem solved. Best regards, Yue From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Yue Cao via Bioc-devel <bioc-devel at r-project.org> Date: Thursday, 11 January 2024 at...

Got it, thank you so much for the explanation. Best, Yue From: Ivan Krylov <krylov.r00t at gmail.com> Date: Sunday, September 10, 2023 at 4:12 AM To: Hu Yue <yyyuehhu at gmail.com>, r-package-devel at r...

Hi, all, I want to conduct a meta-analysis using R on a bunch of articles. The outcomes are in percentage format and it is single group. I am wondering how could I use R to do this kind of...

Dear all: I hope that the file in which the picture is stored has the same name as the " main" title of the picture . But it turns out that , the name of the file is :names(spl.sp)[i].bmp...

Hey I just got feedback from CRAN auto-checking and here are some notes I cannot resolve: * checking CRAN incoming feasibility ... NOTE Maintainer: 'Jian Kang <jiankang at umich.edu>' New submission Possibly mis-spelled words in DESCRIPTION: Kang (7:196...