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Hi Tengfei, On 04/23/2014 02:28 PM, Tengfei Yin wrote: > Hi all, > > I found IRanges:::safeExplode() removed, is there any recommended > alternative method I should use to replace it? It's in S4Vectors now. Cheers, H. > > thanks > > Tengfei...
On 04/19/2013 12:35 PM, Herv? Pag?s wrote: [...] > > comma_sep_strings <- c("AA,TT", "ACGT", "", "TT,A,,TAG") > > DNAStringSetList(strsplit(comma_sep_strings, ",", fixed=TRUE)) > Error in strsplit(comma_sep_strings, ",") : non-character argument Some copy/paste...
Dear Bioconductor developers, Some issue with the software builds prevents us from having a build report today for BioC 3.10. Things should get back to normal tomorrow. Sorry for the inconvenience. Cheers, H. -- Herv? Pag?s Program in Computational...
Hi developers, I'm about to create the BioC 2.7 branch. Together with the version bumps, this should take about 1 hour. Please don't try to commit to svn during this time. Thanks! H. -- Herv? Pag?s Program...
Hi, On 02/27/2012 12:22 AM, Prof Brian Ripley wrote: ... >(Re another message: stats4 *is* "methodsGenerics" for base packages.) Why isn't it called base4 if it's for "base" packages? Thanks, H. -- Herv? Pag?s Program in...
Hi Pariksheet, On 12/10/2021 15:43, Pariksheet Nanda wrote: > > The function in question is: > > > replace_unstranded <- function (gr) { > ??? idx <- strand(gr) == "*" > ??? if (length(idx) == 0L) ^^^^^^^^^^^^^^^^^ Not related to the "internal logical NA value has been modified" error but...
Hi, > setClass("MyList", "list") [1] "MyList" > a <- new("MyList") > a An object of class "MyList" list() > setMethod("[[", "MyList", function(x, i, j, ...) cat("Just testing\n")) > a[[]] Just testing > a[[1]] Just testing > a[[a=1]] Just testing > a[[b...
Hi developers, Our Subversion server at hedgehog.fhcrc.org is currently down due to a hardware failure early this morning. The IT people here at the Hutch are working hard to come with a rescue plan. They've replaced the...
On 20/10/2021 22:40, Pierrick Roger wrote: > It seems the results of the long tests are not sent to the package RSS > feed. Am I missing something? Is there another feed? We only have RSS feeds for Software...
On 21/09/2022 07:57, Herv? Pag?s wrote: > Just a workaround and not a real solution but maybe try to switch the > order of the clusterProfiler and SPONGE reports? > Oops, I meant "imports", not "reports". But, again, reducing...
On 4/13/19 23:33, Herv? Pag?s wrote: > These are methods e.g. the [,SomeClass, [[,SomeClass, and > [<-,SomeClass methods. The procedure to deprecate them is the same as > for deprecating methods in general. So them as (i). So...
Hi, This error message is very confusing/misleading for novice users: > library(c("stats4")) Error in library(c("stats4")) : 'package' must be of length 1 Could it please be improved to mention something about using 'character.only=TRUE' instead? Thanks...
It looks like this has been fixed in current R-alpha. Thanks! H. On 09/28/2010 04:27 PM, Herv? Pag?s wrote: > Hi, > > Cosmetic. Starting R with e.g. --max-ppsize=-10 produces the following > warning: > > WARNING: '-max...
On 02/27/2015 03:28 PM, Martin Morgan wrote: > I noticed that we're at r99955 in svn; who will be the lucky person > making the 100,000th commit? depends how many zeroes after the one you're gonna...
Hi Laurent, Quoting lgautier at altern.org: > (...) > > Since we are about it, I could not find an entry about that automated > mailing (frequency, features) on the bioconductor site ? (on the wiki > presumably, since information for developpers is there). Did I...
On 10/07/2014 10:35 AM, Michael Lawrence wrote: > Looks like we still have to move over the DataFrame, etc tests from IRanges? Yes this and other leftovers. H. > > Michael > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel at r-project...
Hi Bioconductors, Download numbers for Bioconductor Software packages are online at: http://bioconductor.org/packages/stats/ There is no by-version or by-architecture stats yet but this could be added if there is some interest for it. The page...
Hi, Found in ?eapply (in current R-devel): \value{ A named (unless \code{USE.NAMES = FALSE}) list. Note that the order of the components is arbitrary for hashed environments: currently it will be in the order the name-value pairs...
On 8/14/19 10:19, Kasper Daniel Hansen wrote: ... > > Pro-tip: In general, you will be well served not to get too attached to > version numbers. Bump it frequently even without new functionality or bug > fixes and just live...
What is the question? On 3/26/20 17:36, ??? wrote: > > _______________________________________________ > Bioc-devel at r-project.org mailing list > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r...
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