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During this week we will be updating the Single Package Builder to use a new MAC builder. During this updating and testing, the Single Package Builder may produce some sporadic ERRORs or experience intermittent periods of downtime. We will be...

Dear r-bugs, With AIX 5.3 and OBJECT_MODE=64 CC="xlc -q64" CXX="g++ -maix64" and ./configure --without-iconv --enable-R-shlib the following warning occurs: configure: WARNING: tiffio.h: present but cannot be compiled configure: WARNING: tiffio...

Hi Bj?rn-Helge, Bj?rn-Helge Mevik <b.h.mevik at usit.uio.no> writes: > Loris Bennett <loris.bennett at fu-berlin.de> writes: > >> It seems that R needs libcurl 7.28.0, but my platform (Scientific Linux >> 6...

Over the next week, we will be transitioning the Single Package Builder to the latest versions of R and Bioc 3.6. The single package builder is used when new packages are submitted to: https://github.com/Bioconductor/Contributions . Please...

We will be updating the devel builders to the lastest R 4.0.0 later today. This should not affect the daily builder but may interrupt the Single Package Builder for new submission. Build report status for a platform on...

Hi, Before I try to construct a reproducible example, which would probably be quite time consuming, I wondered if this is a known problem. I am calling 'shortestPath' thus shortestPath(conduct_Tobler, origin = sites at coords[1,], goal = sites at...

Hello Bioconductor, We have added DOI's for packages on Bioconductor package landing pages. The DOI will get generated automatically when a package is accepted to Bioconductor. This is the recommended reference to use for publication/citations/etc. The DOI...

Over the next day we will be updating the devel builders to the latest R 4.0 devel to stay as updated as possible with changes to base R before the release. We don't anticipate any disruption with the...

Hi Carol, carol white via R-help <r-help at r-project.org> writes: > Hi,I have R v 3.0 installed /usr/... and the new version R-3.2.3 in my > home under ubuntu. Is it correct to...

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly. The current list of deprecated packages is as follows...

Hi, I recently installed version 3.2.3. When I call install.packages("RCurl") I get a pop-up menu labelled "HTTPS CRAN Mirror" with a shortish list of mirrors. However, I don't seem to be able to reach...

It looks like it did get updated: http://bioconductor.org/checkResults/release/bioc-LATEST/artMS/ Is showing 1.4.3 which is the expected version correct? Remember it can take up to 24 hours for the build reports to pick...

Over the next few days we will be updating the Single Package Builder for incoming Bioconductor submissions to be running on R-devel and Bioc 3.23 devel. During this time period there may be periods that the on demand...

The Bioconductor Team has identified the following list of deprecated packages: Maintainer requested deprecation: Software Package: ontoCAT spliceR (functionalities moved to IsoformSwitchAnalyzeR) mvGST Experiment Data Package: RnaSeqTutorial cheung2010 MEALData (replaced with brgedata) Unresponsive/not-maintained packages: Software: GMRP MBttest OperaMate...

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly leading up to the release. The current list of...

Hello everyone, The Bioconductor dockers (base and core) have been updated for http://bioconductor.org/help/docker/ Release R3.4.2 _ Bioc3.6 https://hub.docker.com/r/bioconductor/release_base2/ https://hub.docker.com/r/bioconductor/release_core2/ Devel...

We apologize for the delay: The ensembl 96 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.9 > library(AnnotationHub) > hub = AnnotationHub() snapshotDate(): 2019-04-29 > length...

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly. The current list of deprecated packages is as follows...

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly. The current list of deprecated packages is as follows...

Hello all, We will be doing some updates and testing on the new package submission code today. There may be periods of downtime where the build on demand with version bump is unavailable. We appreciate your patience and hope to...