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loris.bennett at fu-berlin.de (Loris Bennett) writes: > Hi, > > I am getting the following error > > # (R-2.9.1/src/library/methods): gmake front > > /bin/sh: 0403-057 Syntax error at line 1 : `;' is not expected. > gmake: *** [front] Error...

Hello, We have often found the R-devel binary on the following page: https://r.research.att.com/ And we point our Bioconductor users to this page to download R-devel. The report for 3-15 says R-devel is...

This is a reminder that the last day to pass R CMD build and R CMD check is this Wednesday April 25th. Please update all package that are failing on the build reports by this time. Software Packages: http://bioconductor...

The deadline for packages to pass R CMD build/check without error is Friday April 24. This ensures a build report with the committed changes. The branch will be frozen Monday April 27th to branch for the Release of Bioconductor...

We are encountering ERRORs with the Single Package Builder used for new package submission. Currently, build reports are not being produced on git push. We are aware of the issue and are working to have it resolved as soon as...

There is an announcement at https://cran.r-project.org/ Dear users, The CRAN Admin Team will perform system upgrades during the period Wednesday November 15 until Thursday November 16, 2023. There will be intermittent outages in service during this...

The deadline for packages to pass R CMD build/check without error is Friday October 23. This ensures a build report with the committed changes. The branch will be frozen Tuesday October 27th to branch for the Release of Bioconductor...

Bioconductor Community, We will be switching the single package builder for new package submissions to build off the devel Bioc 3.13 builders shortly. During this time the single package builder will have intermittent connectivity and you will not receive...

We have identified an issue with our builders connectivity. It has resulted it numerous build ERRORs and limited OS being included on today's report. While the issue appears resolved, we are investigating the issue. As precautionary we are delaying...

Please continue this conversation on the issue being reviewed. In general, packages are expected to build and check in a reasonable amount of time. If you see this across all platform, there may be opportunities to improve your code and...

Deadline to nominate Bioconductor community members for awards is tomorrow May 31st! Please consider nominating community members and members from your labs! From long time contributors, to enhancing diversity, to education, to a specialized junior developer / new package contributor award...

We are seeing a BiocFileCache default directory ERROR appearing on the devel build reports. This seems to be a recent ERROR, introduced sometime in the last week, and we are trying to track down the offending package that builds the...

Hello all, We updated R on the release builders this week to be R 3.6.2. The windows update had some consequences on todays build report resulting in many false-positive ERRORS for tokay1. Please ignore the tokay1 result...

Hi, Calling gdistance::shortestPath gives me the error Error in asMethod(object) : not a symmetric matrix; consider forceSymmetric() or symmpart() The output of dput(.traceback()) is pairlist("stop(\"not a symmetric matrix; consider forceSymmetric() or symmpart()\")", "asMethod(object)", "as(Laplacian...

Hello all, The fasta (twobit files) for release-87 and release-88 have been added to AnnotationHub and are currently available in Bioc3.6 (development) with AnnotationHub (<= 2.9.0): > library(AnnotationHub) > hub = AnnotationHub() updating metadata: retrieving 1 resource |======================================================================| 100...

Bioconductor is pleased to announce a call for community volunteers to assist with Bioconductor Package Reviews. This is an excellent way to get involved with and give back to the Bioconductor Community. The minimum requirement to volunteer is to be...

The Bioconductor Release 3.8 is fast approaching The deadline for all packages to pass R CMD build and R CMD check without ERROR or WARNING is this Friday October 26. If packages have been broken for an extended period...

Hello all, The ensembl 93 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.8 Bioconductor version 3.8 (BiocManager 1.30.1), ?BiocManager::install for help...

Hello Bioconductor Developers, In an effort to be more compliant, we have developed an application that will remind maintainers of Bioconductor policies and code of conduct. It will require maintainers to opt into Bioconductor policies once a year; failure to...

Hello all, The ensembl 92 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.7 Bioconductor version 3.7 (BiocInstaller 1.29.6), ?biocLite for help > library...