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7 results for “from:Ahmed Mohamed”

[Bioc-devel] Bioc_since shield broken for packages accepted <6 months ago
Ahmed Mohamed · Sep 18, 2019 · bioc-devel

Hi All, I noticed that all packages accepted in Bioc 3.9 have their Bioc_since (year-in-bioc) broken. Following the svg link indicates a code error. Here is an example from our package https://bioconductor.org/shields/years...

[Bioc-devel] lipidr: Unable to reproduce error (possibly from S4Vectors)
Ahmed Mohamed · Jun 16, 2020 · bioc-devel

Hi all, My package "lipidr" has been failing checks for a while, giving the error below: Error in .wrap_in_length_one_list_like_object(value, name, x) : failed to coerce 'list(value)' to a IheatmapPlots object of length 1...

[Bioc-devel] Bioc_check on devel - Checking R Version dependency warning
Ahmed Mohamed · Mar 26, 2019 · bioc-devel

Hi all, I noticed that bioc_check on devel checks for R version dependency, and produces a warning to change R dependency to 3.6 (currently set as R >= 3.5.0). Just quickly looking at Bioconductor packages, it seems...

[Bioc-devel] libsbml and libxml2 on palomino3 BBS
Ahmed Mohamed · Feb 27, 2023 · bioc-devel

I'm encountering issues when building my package NetPathMiner on palomino3 ( http://bioconductor.org/checkResults/devel/bioc-LATEST/NetPathMiner/palomino3-checksrc.html). The package depends on system libraries libxml2 and libsbml. So far, I've been using `LIB_XML2` and...

[Bioc-devel] lipidr: Unable to reproduce error (possibly from S4Vectors)
Ahmed Mohamed · Jun 21, 2020 · bioc-devel

Excellent catch Martin. I was able to confirm the issue using the script below (on Bioc-Devel Docker). The issue was also resolved by simply reinstalling iheatmapr. It would be great if iheatmapr is reinstalled manually on the devel build...

[Bioc-devel] Bioc_check on devel - Checking R Version dependency warning
Ahmed Mohamed · Mar 27, 2019 · bioc-devel

Thanks Lori for the clarification. If the purpose of the check is to capture the R version upon submission to Bioconductor, then it makes sense. I would suggest a bit of clarification in the docs though. Also, a warning is...

[Bioc-devel] lipidr: Unable to reproduce error (possibly from S4Vectors)
Ahmed Mohamed · Jun 17, 2020 · bioc-devel

Thanks Vincent. I would like to debug the error, but I still cannot reproduce it. SessionInfo, below, shows update to date versions! My Travis build also works, with Bioc Devel and iheapmapr 0.4.12 ( https://travis-ci.org/github...

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