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I requested a password reset from this site: https://git.bioconductor.org/BiocCredentials/login/?next=/BiocCredentials/ a couple of times and I haven't received it. Not sure what to do. Thanks, Augustin Luna

I have the following error: "error: JAVA_HOME cannot be determined from the Registry" for this package: https://bioconductor.org/checkResults/devel/bioc-LATEST/paxtoolsr/riesling1-install.html I have been given assurances that Java is present but given this...

Is the ExpressionSet class deprecated? If it is, what are the ramifications of this? * Are new packages barred from using ExpressionSet? * Will existing packages that use ExpressionSet be forced to move to SummarizedExperiment? If so, when? * Often deprecation means the...

I am currently the maintainer of https://bioconductor.org/packages/release/bioc/html/paxtoolsr.html I have been using an email from a previous institute, but it seems I am no longer receiving emails through it. I tend to verify...

I've made needed changes to paxtoolsr for the next release. I cannot push to Bioconductor; see below. paxtoolsr is essentially a wrapper around the jar with helper functions; the jar has been there since the beginning. Please advise. Augustin...

I do have access to the email, but I can no longer send emails from the mskcc.org account. I just activated my account; I thought it was the account from the SVN. I need to spend some time trying...

As far as Git is concerned yes a change was made, but it was probably a move or a rename. So how do we move forward? paxtoolsr has been greater than 5MB for all of its history (4-5 years...

Thanks for the responses. But they are not addressing my problem. I have GitHub Actions checking the package on Windows/macOS/Linux using Java OpenJDK 14 with tests/examples running fine on both R release and devel. https://github.com...

I'll keep that in mind and do it soon. A bigger concern for me. Currently, I think that the development version is passing checks while the the release version is not. I committed a lot of changes, many interconnected...

I just pushed. I guess we'll soon see if my updates fix some problems have been happening with the package. Augustin Luna On Mon, Sep 24, 2018 at 11:24 AM, Turaga, Nitesh <Nitesh.Turaga at roswellpark.org> wrote...