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10 results for “from:Erik Fasterius”

[Bioc-devel] Remaining windows build error
Erik Fasterius · Apr 2, 2019 · bioc-devel

I am still getting a Windows build error in my seqCAT package. I thought this was a problem with VariantAnnotation after an update, which also seemed to be the case after communication with Valerie Obenchain. My package was apparently not...

[Bioc-devel] Landing page not updating version number
Erik Fasterius · Oct 12, 2017 · bioc-devel

Hey, Bioconductors! I recently got my package (?seqCAT?) accepted into bioconductor and I?m now trying to fix the last things before release (this is my very first R package). I updated the NEWS file and updated the version number...

[Bioc-devel] scanVCF: _DNAencode(): invalid DNAString input character: '1'
Erik Fasterius · Jan 8, 2019 · bioc-devel

I recently started to get a weird error when building the vignette to my seqCAT package, related to a VCF file I use as example data. The error itself looks like this: scanVcf: _DNAencode(): invalid DNAString input character: '1' (byte...

[Bioc-devel] Travis CI errors for BiocManager
Erik Fasterius · Jan 3, 2019 · bioc-devel

Hi, I?m currently updating my package `seqCAT` with some new code, and I always run it through Travis CI before pushing changes to Bioconductor. The last build errors with the following message: Updating HTML index of packages in '.Library...

[Bioc-devel] Windows-specific build error of 'seqCAT' package
Erik Fasterius · Mar 7, 2019 · bioc-devel

Hi, My seqCAT package recently broke building on the Windows platform, which I assume has to do with changes to the VariantAnnotation package (upon which seqCAT depends). The error (which comes during the creation of the vignette) looks like this...

[Bioc-devel] Resetting to previous commits
Erik Fasterius · Aug 14, 2019 · bioc-devel

I made some changes to my seqCAT package the last few days in order to prepare for version 1.0.0 of tidyr, which was apparently harder than I initially thought. I was also a bit too quick with pushing...

[Bioc-devel] Travis CI errors for BiocManager
Erik Fasterius · Jan 3, 2019 · bioc-devel

Ah, okey! Very good to know, thank you! Is there a way I can keep track of this, to see when it gets fixed? Erik > On 3 Jan 2019, at 14:00, Martin Morgan <mtmorgan.bioc at gmail.com> wrote...

[Bioc-devel] scanVCF: _DNAencode(): invalid DNAString input character: '1'
Erik Fasterius · Jan 9, 2019 · bioc-devel

Thanks for the update, Valerie! And thanks for asking the question that I also had in mind, Kevin. I?ll follow the GitHub issue and retry once the change has been reverted. Erik On 10 Jan 2019, at 03:13...

[Bioc-devel] Windows-specific build error of 'seqCAT' package
Erik Fasterius · Mar 18, 2019 · bioc-devel

Hi, Valerie! Thanks for looking into the problem! I hope it?ll work out. Erik On 16 Mar 2019, at 22:51, Valerie Obenchain <obenchain.valerie at gene.com<mailto:obenchain.valerie at gene.com>> wrote: It doesn't look...

[Bioc-devel] Resetting to previous commits
Erik Fasterius · Aug 14, 2019 · bioc-devel

Thank you for the prompt response! I will just add more versions on top of what I have already added. Would it be correct to assume that Bioconductor will try to build the most recent version available, even though it...

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