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Sorry, I didn't report many details since, as I wrote, the work is still in progress. However our functions will not be included into a novel package. Our functions retrieve information concerning x/y coordinates of PM and MM...
A few days ago I received a couple of bug reports concerning an error message occurring when using gcrma preprocessing procedure with custom probeset definitions (gahgu133acdf and gahgu133aprobe package). The source of the problem is one single missing probe sequence...
I found an interesting "trick" adopted within the package mtachprobes to solve this problem... i.e. obtaining chip dimensions information from current versions of CDF packages. Within the package "matchprobes" there's a function named ".lgExtraParanoia" If you read this...
If xy2i() and i2xy() functions from CDF packages will be deprecated, we could use the indices2xy() and xy2indices() functions from affy package, but they require either "nr" parameter or an affybatch object.... The "nr" parameter, i.e. the size of...
Looks like a CRAN package is no more available, and this is triggering a problem with a ?suggested? dependency * checking package dependencies ... ERROR Package suggested but not available: ?samr? which indeed has been removed from CRAN on July 20: https...
Dear Lori, I already foxed the issue in the devel branch which now gives a clean check: https://bioconductor.org/checkResults/3.8/bioc-LATEST/ The problema was due to a CRAN dependency no more available since July 20, 2018...
Dear all, if I understand correctly, the main problem stems from the fact that the function has set a default value for "Output.Filename? argument. Would it then be ok to have NO default value for Output.Filename? So as...
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