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2,306 results for “from:Hervé Pagès”

[Bioc-devel] Propose to pass `...` to as.data.frame, GenomicRanges
Hervé Pagès · Apr 30, 2012 · bioc-devel

Thanks! H. On 04/30/2012 12:18 PM, Steve Lianoglou wrote: > I've done did it. > -steve

[Bioc-devel] cyclic dependency bug in Rdbi
Hervé Pagès · Mar 23, 2011 · bioc-devel

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Last R-devel snapshot is an empty tarball
Hervé Pagès · Oct 4, 2006 · r-devel

Dear list, The last R-devel snapshot (2006-10-03) is an empty tarball: ftp://ftp.stat.math.ethz.ch/Software/R/ Thanks, H.

[Bioc-devel] deprecating GenomeData and GenomeDataList
Hervé Pagès · May 8, 2014 · bioc-devel

On 05/08/2014 05:00 PM, Dario Strbenac wrote: > We could simply remove the GDL2GRL function once the GenomeData and GenomeDataList are defunct. Sounds good. H.

[Bioc-devel] stale link to reposTools in BioC FAQ?
Hervé Pagès · Nov 8, 2006 · bioc-devel

James W. MacDonald wrote: > Hi Steven, > > reposTools is now defunct (see #5): Right, and the FAQ needs an update. Thanks for pointing this out! Regards, H.

segfault in gregexpr()
Hervé Pagès · Jan 31, 2008 · r-devel

Hi Seth, Seth Falcon wrote: > Hi again, > >> Herve wrote: >> > gregexpr("", "abc", fixed=TRUE) >> >> *** caught segfault *** >> address 0x1c09000, cause 'memory not mapped' > > This should be fixed in latest svn. Thanks for the report. That's great. Thanks! H. > > + seth >

dbWriteTable() is renaming the 'end' column
Hervé Pagès · Sep 30, 2009 · r-sig-db

Gabor Grothendieck wrote: > 2009/9/30 Herv? Pag?s <hpages at fhcrc.org>: >> According to >> >> SQLKeywords(dbDriver("SQLite")) > > > Try > >> library(RSQLite) >> grep("^END$", .SQL92Keywords, value = TRUE) > [1] "END" Indeed. Sorry for the confusion. H.

Nightly builds of R-devel
Hervé Pagès · Mar 18, 2007 · r-sig-mac

Hi there, Anybody knows what happened to the nightly builds of R-devel? http://r.research.att.com/ Last build was on February 25th. Any idea when they're gonna be back? Thanks! Best, H.

Strange behaviour of the [[ operator
Hervé Pagès · Sep 29, 2006 · r-devel

Hi, This looks like a bug: > a <- list(b=5) > a[['b']] [1] 5 > a[[t<-'b']] Nothing gets printed! I need to use parenthesis to see the expected result: > a[[(t<-'b')]] [1] 5 Cheers, H.

rggobi not in bin/macosx/universal/contrib/2.6/PACKAGES on CRAN
Hervé Pagès · Sep 26, 2007 · r-devel

hadley wickham wrote: [...] > I've fixed the problem with GGobi, and Simon has updated the version > on CRAN, so you should be able to get a binary version again v. soon. Thanks! H.

[Bioc-devel] Subversion server will be down Wednesday for 30 minutes
Hervé Pagès · Jun 4, 2007 · bioc-devel

Hi BioC developpers, Our Subversion server (hedgehog.fhcrc.org) will be down for maintainance around 6 AM (Pacific Time) on Wednesday June 6th for about 30 minutes. Sorry in advance for the inconvenience. Regards, H.

rowSums()/colSums() don't preserve the 'integer' storage mode
Hervé Pagès · Jul 16, 2008 · r-devel

Hi, Wouldn't that make sense to have rowSums()/colSums() to preserve the storage mode? m <- matrix(1:15, nrow=5) > storage.mode(m) [1] "integer" > storage.mode(sum(m)) [1] "integer" > storage.mode(rowSums(m)) [1] "double" <------------------- surprising! Cheers...

[Bioc-devel] How to speed up GRange comparision
Hervé Pagès · Jan 30, 2020 · bioc-devel

On 1/30/20 13:17, Michael Lawrence wrote: > That sucks. It was broken since it was added in 2017... now fixed. Unfortunately these things tend to happen to stuff that doesn't have examples or unit tests. Thanks for...

[Bioc-devel] How to speed up GRange comparision
Hervé Pagès · Jan 30, 2020 · bioc-devel

On 1/30/20 11:10, Herv? Pag?s wrote: > Yes poverlaps() is a good option, as mentioned earlier. Well actually not. Looks like it's broken: > poverlaps(GRanges("chr1:11-15"), GRanges("chr1:16-20")) Error in isSingleNumber(minoverlap...

[Bioc-devel] Exposing some more IRanges mojo to C.
Hervé Pagès · Nov 3, 2011 · bioc-devel

On 11-11-02 05:46 PM, Herv? Pag?s wrote: > This is done in IRanges 1.13.2. The exposed function is > _seqselect_Rle(). Actually I should say that the exact name of the exposed function is seqselect_Rle...

[Bioc-devel] some turbulences due to IRanges/S4Vectors split
Hervé Pagès · Sep 11, 2014 · bioc-devel

Hi developers, I recently moved SimpleList and DataFrame from IRanges to S4Vectors. That breaks a number of packages as you can see on today's build/check report: http://bioconductor.org/checkResults/3.0/bioc-LATEST/ Will fix today. Sorry...

Question regarding .make_numeric_version with non-character input
Hervé Pagès · Apr 25, 2024 · r-devel

On 4/25/24 07:04, Kurt Hornik wrote: ... > Sure, I'll look into adding something. (Too late for 4.4.0, of course.) > > Best > -k Great. Thanks! H. -- Herv? Pag?s Bioconductor Core Team hpages.on.github at gmail...

source(..., echo=TRUE) broken in R-2.5.0 alpha and in R-2.6.0 devel
Hervé Pagès · Apr 4, 2007 · r-devel

Duncan Murdoch wrote: > > Thanks for reporting this. > > This is now fixed and committed to svn. It will take a day or two for > the change to make it onto CRAN. OK. Thanks Martin and Duncan! Cheers, H.

R 'base' returning 0 as sum of NAs
Hervé Pagès · Feb 9, 2017 · r-devel

On 01/11/2017 02:33 AM, Alex Ivan Howard wrote: > There is nothing to sum > over, so it shouldn't actually be able to return a concrete numeric value? How much did you spend at the grocery store if...

[Bioc-devel] Bioconductor 2.7 Release Schedule
Hervé Pagès · Sep 17, 2010 · bioc-devel

On 09/17/2010 12:32 PM, Herv? Pag?s wrote: > Hi developers, > > R-devel went alpha today and R-2.12.0 is scheduled for Friday, > October 15, 2010. > > We plan to release Bioconductor 2.7 on Monday, October...

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