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425 results for “from:James Pustejovsky”

[R-meta] Non-positive definite covariance matrix for rma.mv
James Pustejovsky · Jul 1, 2024 · r-sig-meta-analysis

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[R-meta] Correcting Hedges' g vs. Log response ratio in nested studies
James Pustejovsky · Nov 2, 2023 · r-sig-meta-analysis

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[R-meta] Why does rma.mv does not show the same results as robumeta?
James Pustejovsky · May 23, 2021 · r-sig-meta-analysis

Hi C?tia, Here are links to some previous listservs discussions on this topic: https://stat.ethz.ch/pipermail/r-sig-meta-analysis/2017-September/000223.html https://stat.ethz.ch/pipermail/r-sig-meta-analysis/2017-August/000130.html

[R-meta] Performance of metafor::vcalc() vs clubSandwich::impute_covariance_matrix()
James Pustejovsky · Aug 15, 2024 · r-sig-meta-analysis

On Tue, Aug 13, 2024 at 4:45?AM Viechtbauer, Wolfgang (NP) < wolfgang.viechtbauer at maastrichtuniversity.nl> wrote: > @James: The deprecation message (Please use `metaffor::vcalc()` instead.) > has a typo (should be metafor::vcalc()). > Shoot. Thanks for pointing this out...

[R-meta] Does clubSandwich::coef_test() handle crossed random-effects?
James Pustejovsky · Oct 3, 2021 · r-sig-meta-analysis

On Sun, Oct 3, 2021 at 1:18 PM Farzad Keyhan <f.keyhaniha at gmail.com> wrote: > I see, I'm still exploring to see what has caused the two models in my > previous email to give slightly different fits...

[R-meta] sd of blups vs tau in RE model
James Pustejovsky · Jun 29, 2023 · r-sig-meta-analysis

> > Thanks for your clarification. Your explanations are very clear. > Actually, the SD of BLUPs and tau will converge when the within-study > replicates are getting large. > Can you say more about this? Is this claim based on simulations or something...

[R-meta] Computing treatment effects with 95%CI from a meta-regression output
James Pustejovsky · Sep 6, 2020 · r-sig-meta-analysis

The easiest thing to do is probably to simply recalculate the model after omitting the intercept term: robu(formula = es ~ 0 + Time, data = SMD,studynum = study, var.eff.size = var,rho = .8, small = TRUE, modelweights = "CORR") Sent from my iPhone...

[R-meta] Meta-analysis of meta-analyses
James Pustejovsky · Feb 2, 2022 · r-sig-meta-analysis

I wonder about exactly this question for most of the second-order meta-analyses that I have seen. Beyond issues of statistical dependence, SOMA tend to further conceal heterogeneity of effects. Averaging together averages makes it that much harder to...

[R-meta] Unrealistic confidence limits for heterogeneity?
James Pustejovsky · Apr 2, 2023 · r-sig-meta-analysis

<Nerdy follow-up question> One can of course construct a dataset where the likelihood profile peaks > essentially at -min(vi) (or rather, just a smidge above it), which might > suggest that a value of tau^2 that is even smaller...

[R-meta] Interpreting variance components in rma.mv
James Pustejovsky · Aug 21, 2022 · r-sig-meta-analysis

Hi Yuhang, But is it appropriate to assume that true effects' dispersion at time 0 and > time 1 is exactly the same (equality of variances across time points)? > The model you've fit assumes that the variances are equal across...

[R-meta] Peters test in metafor
James Pustejovsky · Jul 14, 2017 · r-sig-meta-analysis

Use regtest() with model = "lm" and predictor = "ninv." Note that you'll need to provide the total sample sizes too. On Fri, Jul 14, 2017 at 9:26 AM, Phil Jones <philpauljones at gmail.com> wrote: > I would like to...

[R-pkg-devel] Is using global assignment in package tests allowed?
James Pustejovsky · Jan 27, 2022 · r-package-devel

Hello, I'm writing unit tests using testthat for a package that we want to submit to CRAN. Because of some aspect of how testthat works (which is beyond my ken), I have only been able to get my tests...

[R-meta] mean-variance relationships introduces additional heterogeneity, how?
James Pustejovsky · Oct 25, 2021 · r-sig-meta-analysis

Responses below. On Mon, Oct 25, 2021 at 4:21 PM Luke Martinez <martinezlukerm at gmail.com> wrote: > > Sure, thanks. Along the same lines, if I see that the unconditional > distribution of the SMD estimates is multi-modal or right...

[R-meta] unsigned effect sizes
James Pustejovsky · Feb 11, 2022 · r-sig-meta-analysis

Hi meta-analysis folks, I have a kind of vague question about something I've run across a few times. There are some (perhaps rare) situations where investigators are interested in the absolute magnitude of an effect but where the...

[R-meta] inter-rater agreement for multiple raters
James Pustejovsky · Aug 1, 2017 · r-sig-meta-analysis

This question pertains to a common issue in systematic reviews (although not meta-analysis per-se). I have a group of 5 raters who screened abstracts for possible inclusion in a systematic review. Each abstract was scored (dichotomously, as "not...

[R-meta] imputing covariance matrices for meta-analysis of dependent effects
James Pustejovsky · Aug 10, 2017 · r-sig-meta-analysis

All, A common problem in multivariate meta-analysis is that the information needed to calculate the correlation between effect size estimates is not reported in available sources, even when the variances of the estimates can be calculated. One approach to...

[R-pkg-devel] Is using global assignment in package tests allowed?
James Pustejovsky · Jan 27, 2022 · r-package-devel

Yes, that's a good point. Thanks for the reminder. On Thu, Jan 27, 2022 at 10:52 AM Dirk Eddelbuettel <edd at debian.org> wrote: > > On 27 January 2022 at 11:18, Ben Bolker wrote: > | I have spent hours...

[R-pkg-devel] Rdmacros as Suggests rather than Imports
James Pustejovsky · Jan 22, 2021 · r-package-devel

Greetings, I'm writing to see if anyone has suggestions for how to handle an issue I'm facing with the clubSandwich package ( https://CRAN.R-project.org/package=clubSandwich; Github repo: https://github.com/jepusto/clubSandwich). The package documentation...

[R-meta] bootstrap predicted value
James Pustejovsky · Oct 20, 2022 · r-sig-meta-analysis

Hi Patrizio, Your question is not specific enough for someone to provide a response. Perhaps if you can provide more context and detail, someone might be able to offer pointers. Is this in the context of a meta-analysis? predictive...

[R-meta] Specifying the random effect structure of our multilevel meta-analysis in metafor
James Pustejovsky · Jan 23, 2023 · r-sig-meta-analysis

Hi Paco, Responses below. James On Mon, Jan 23, 2023 at 4:25 PM Tomas-Valiente Jorda Francisco < tomasf at student.ethz.ch> wrote: > One clarification question on the RVE approach you suggest. Your proposal > is that (as per the...

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