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Yes, just an error by copy/paste [[alternative HTML version deleted]]

Hi, if yes, how to a avoid biocCheck failure? Thanks Karim [[alternative HTML version deleted]]

Dear All, How can I add folder content examples of needed files to run example? The simple add of folder did not built and reload with the package. Thanks! Karim [[alternative HTML version deleted]]

Hi, All right for rpart package but it seems there is a confusion in "text" function. prp is not found Error in fun() : could not find function "prp" Thanks ?__ c/ /'_;~~~~kmezhoud (*) \(*) ????? ?????? http://bioinformatics.tn/ [[alternative HTML version deleted]]

Hi, I'm developing R package with GUI. I would write a file that run R and load package by double clic. I am using Kubuntu. If there is a solution with windows or mac, I am interested too. Thanks...

Hi All, I would like to choice between these two data frame convert. which is faster? for(i in 1:ncol(DataFrame)){ DataFrame[,i] <- as.numeric(DataFrame[,i]) } OR DataFrame <- as.data.frame(apply(DataFrame,2 ,function(x) as.numeric...

Dear All, here an example temp <- list(set1=c("a","b","d","x"), set2=c("b","c","q","m"), set3=c("b","f","e","k","q","h")) preserve only the first one string >temp set1 a b d x set2...

Mantel test is interesting but it can't displays wish columns are similar. Here an example: M gene1 gene2 gene3 gene4 gene5 Sample1 2 4 1 7 2 Sample2 0 NA 2.3 1 9 Sample3 ...... M1, M2, M3 are...

Dear all, I re-cloned my package (canceR <http://www.bioconductor.org/packages/3.9/bioc/html/canceR.html>), following this tutorial <http://bioconductor.org/developers/how-to/git/maintain-bioc-only/>. And I commit some changes (05 May), and...

Dear R, usually, Shiny app uses global variables saved in a session. These variables can be returned by client web page (checkbox or select). for example: FUN1 <- function(input$var1){ a <- input$car1 + input$globalVar2 return (a) } when I run...

Dear All, I am trying to built for the first time a package. I am following this tutorial: https://support.rstudio.com/hc/en-us/articles/200486488-Developing-Packages-with-RStudio I create a new Project (package) and I added...

Dear aal, Is there a way to rotate array or a cube of matrices by Y axis? MatLab example: A = cat(3,{'a' 'b' 'c';'d' 'e' 'f';'g' 'h' 'i'},{'j' 'k' 'l';'m' 'n' 'o';'p' 'q' 'r...

Dear all, I found some threads about compiling r-devel source and installing process but I need some clarifications. 1. Is it better to uninstall R 3.1 before installing R-devel? 2. I have multiples library directories, R-devel...

Hi, I am learning CNN using MXNet R package. I am following this great tutorial about olivetti_faces reconnaissance <https://www.r-bloggers.com/image-recognition-tutorial-in-r-using-deep-convolutional-neural-networks-mxnet-package/>. In the end after...

Dear All, ## function to relpace empty cell by NA empty_as_na <- function(x){ if("factor" %in% class(x)) x <- as.character(x) ## since ifelse wont work with factors ifelse(as.character(x)!="", x, NA) } ## connect to spark local sc...

Dear All, I am writing a GUIpackage that needs global variables. I had many warning message when I checked the code as for example: geteSet: no visible binding for global variable ?curselectCases? I would like to write a function that...

Dear All, I would like to reset default R_HOME PATH for R.3.1.3. I installed R-devel in /usr/local/R-devel but I can't install many packages as tcltk. I uninstalled R-devel and I...

Dear BioC devel, I did not understand the following error check message. http://www.bioconductor.org/checkResults/3.3/bioc-LATEST/canceR/moscato2-checksrc.html Any suggestion is welcome. Thank you Karim ### Running command: ### ### rm -rf canceR.buildbin-libdir canceR...

Dear All, I have a gene list Genes <- c("ACACA", "BAX" , "BCL2", "BID", "BAX", "MAPK9") and a list of group of genes ListGroup <- list(group1=c("ACACA" ,"AHSA1" ,"AIMP2" , "AKR1B1", "AKT1", "AKT1S1"), group2=c("ANXA1" , "AR" , "ARID1A" , "ATM" , "BAK1" , "BAX...

Dear admin, I re-submit my ssh key to the google form. Maybe I need to wait to get approved. Actually I do not have access to push updates for bioCancer package. bioCancer Mezhoud$ git remote -v origin https://github...