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Hi, I have managed to navigate through the dependency issues on my work desktop. Over the weekend I will mess about on my own laptop to follow your suggestions to get the 2.5 binary installed form from launchpad. Thank...

Hello, Have I missed the deadline for the latest release? I have created a package, that runs great but there are a number of errors still from R CMD check that I am sorting out. This is my first R...

Hi all, I almost have a clean R CMD check. R CMD check results0 errors | 0 warnings | 1 note checking installed package size ... NOTE installed size is 6.1Mb sub-directories of 1Mb or more: data 3.0Mb doc 2...

Hi all, I have just submitted a new package for inclusion in the next bioconductor release. According to the instructions <https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md#adding-a-web-hook>, after adding a new issue I must...

Oh lord, rookie mistake....i was in the main settings instead of the repository settings haha Thank you Martin! On Fri, Aug 17, 2018 at 6:07 PM, Kenneth Condon <roonysgalbi at gmail.com> wrote: > Hi all, > > I have just...

Hi all, I want to submit a package to bioconductor this week but first I want to build it on the latest R 3.5 release (with bioconductor 3.7). However, CRAN only has 3.4 binaries <https://cran.r...

Hi, I am creating my first package and have run into an issue when building the vignette with devtools::build_vignette() in Rstudio. In a nutshell, I add_vignette() , make a few edits, build_vignette, view the redered html. That...

Hi all, I'm hoping to submit my package soon. But I am having issues with the vignette. R CMD check results0 errors | 1 warning | 0 noteschecking files in ?vignettes? ... WARNING Files in the 'vignettes' directory but no files in...

I forgot to add the YAML header of my .rmd file. --- title: "User Guide" author: "Kenneth Condon" date: "`r Sys.Date()`" output: html_document: number_sections: true theme: cerulean highlight: default toc: TRUE toc_depth: 3 toc_float: collapsed: TRUE...

Such a simple fix, thank you Vincent. On Fri, May 11, 2018 at 7:11 PM, Vincent Carey <stvjc at channing.harvard.edu> wrote: > add something like this > > vignette: > > > %\VignetteIndexEntry{[your index entry]} > > %\VignetteEngine{knitr::rmarkdown} > > %\VignetteEncoding{UTF-8} > > to...

Hi all, It sounds like the best thing to do is go back to the original binary and remove the source installation. Clarice, you know I can't even remember if I did that - I think I might try fix...

Hi Lori, Thanks for the reply. The actual tar.gz built by R CMD build is only 3Mb so maybe I should ignore the note and submit? The note may actually be referring to large .git objects in the git...

Hi Gabe & Levi, Here is my current plan: 1 - complete the requirements checklist ( http://www.bioconductor.org/developers/package-submission/) 2 - get feedback the in-house NGS team, and then from the rest of in-house bioinformatics (others who use...