Search Archives

An embedded and charset-unspecified text was scrubbed... Name: not available URL: <https://stat.ethz.ch/pipermail/bioc-devel/attachments/20140807/eb926473/attachment.pl>

An embedded and charset-unspecified text was scrubbed... Name: not available URL: <https://stat.ethz.ch/pipermail/bioc-devel/attachments/20140808/688ebf86/attachment.pl>

Dear all, Being on the developer side of things, I have resolved two items related to my package on the support website, and I would like to know how my answer could be marked as "accepted", so that it shows...

Dear all, I fixed a bug affecting one particular situation in my package (GOexpress) yesterday, and pushed the changes to GitHub. However, the webhook did not trigger to update the page, due to the feature freeze if I understand the...

"Original Post(er)" I assume? On 20 October 2015 at 16:15, James W. MacDonald <jmacdon at uw.edu> wrote: > The OP needs to accept your answer. > > On Tue, Oct 20, 2015 at 10:14 AM, Kevin Rue-Albrecht < > kevin...

Well spotted Tiphaine ! I just checked and this has affected my package (GOexpress) as well, as it fetches the external_gene_id to annotate gene features. This prevent the key analysis step from completing on my analysis of *Bos taurus...

Dear maintainer, Dear all, *Situation* I have used the findOverlaps(function) to annotate differentially methylated regions (DRMs) obtained using the bsseq Bioconductor package in the *Bos taurus* genome. (No, you won't steal my experimental design :-P ). I used the...

Hi Bioconductors, I got the *BUILD* ERROR report below on all platforms last night. Given the fact that I didn't update my package since the last (successful) build, and the error ''BiocInstaller' package not in repository'', I have a...

Dear all, I would like to introduce a recent addition to Bioconductor. I hope those of you working with transcriptomics data will find it useful for their own work. *GOexpress *is a package taking an *ExpressionSet *object minimally including *assayData...

Hi all, Tim, Just for a second validation, I can log in again too while I couldn't yesterday as described in this thread. Anyway, thanks for fixing it so rapidly! Cheers, Kevin On 16 October 2014 06:17, Tim...

Hi Tiphaine, I have followed both of your links,. and they both work for me. Probably just a glitch in the connection ? Hi Dan, I have a quick question of my own, I would like to bridge the new release...

Hi again, Update on my issue, although I haven't found the source of the error yet.. I have correct overlaps in one scenario, but not in another. This suggests that the findOverlaps() command works as expected on my data...

Hi Dan, Robert, Thanks for the answer and fix, Dan. I thought it might be to do with the recent release. I just wanted to make sure whether I should be doing something on my part. Setting the "biocLite" code...

Hi Stephanie, I am using rss2email ( http://www.allthingsrss.com/rss2email/getting-started-with-rss2email/), a script that I installed to track my package feed, and that is run by my Windows task scheduler every day, to send me the...

Hi all, for this concluding email ! I found the problem in my code: Everything was in the right place, except that I initialised the column meant to store the chromosome name with NA values (DMRs without hits will be left...

Hi Dan, all Maybe a silly question, but: where is the R-alpha 3.2.0 ? So far, I have only pushed to the devel branch (3.1.x), hoping that all my commits (most recent: 19 Mar) will be...

Thanks Robert, that is a great idea indeed. I like doing checks before submitting a new release to the tracker. Avoids bad surprises. Just to be clear, in this case, I wasn't expecting to see any change in the...

Hi Dan, Ok good, you have just given me the most recent commit that I did today, so the ones I was most concerned about (from yesterday) should be there too, that's good for me. The changes should show...

Alright, I'll do one more final round of manual testing, just in case. At the moment, I can see the reports for 2014-10-08 16:20:09 -0700 (Wed, 08 Oct 2014) , so I'll just wait to...