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Dear all, As far as I managed to see the weights parameter in nlme::lme(), mgcv::gamm(), gamm4::gamm4(), can be used to pass some specific residual variance structure based on nlme's varFunc class. I was wondering if the...
Thanks for the code and suggestions. Trying to run the analysis in metafor was on the TODO list. Thank you for saving me the time on figuring out the syntax. If I may ask for clarification, what do you mean...
Dear all, I am trying to submit an update of my mvSLOUCH package to CRAN an am getting the following problem from the automatic pretest: Dear maintainer, package mvSLOUCH_2.6.5.tar.gz does not pass (yesterday and today...
Dear all, I have a question about R's modification in place and replacement functions. I was working through Hadley Wickham's Advanced R section on Replacement Functions and in a file (say test.R) I wrote: `second<-` <- function(x...
Looking manually the chain is actually different mvSLOUCH <--- TreeSim <-- geiger <-- phytools <-- gtools TreeSim does not import anything directly from phytools But given the amount of packages that depend on gtools and seeing how long the above path is, I wonder...
Hello! I am trying to update my mvSLOUCH R package and am getting it rejected due to failures on r-devel-linux-x86_64-debian-clang and r-devel-linux-x86_64-debian-gcc . The error is thrown when running...
Thank you. The only problem, as I wrote, is that neither my package, mvSLOUCH, nor any package that mvSLOUCH imports from depends on gtools. In particular nowhere in mvSLOUCH do I use any call to anything from gtools nor to...
Hello! Thank you Wolfgang, it was really helpful. It seems that the issue with sigma fixed in nlme::lme() still persists. With nlme_3.1-141 I reran the code by Maciej Beresewicz from https://bugs.r-project.org/bugzilla...
Dear all, I wanted to let you know about four phylogenetic comparative methods (PCM) packages that have become available on (3 on CRAN and 1 on GitHub) recently that hopefully will be interesting to somebody. Three of them go significantly...
PS The below code does not work directly df_Dummy<-as.data.frame(matrix(rnorm(20),ncol=2,nrow=10)) df_Dummy$id<-as.factor(1:nrow(df_Dummy)) df_Dummy$merror<-rexp(10) colnames(df_Dummy)[1:2]<-c...
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