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Thanks again -- View this message in context: http://r.789695.n4.nabble.com/LDA-and-confidence-ellipse-tp4671308p4671427.html Sent from the R help mailing list archive at Nabble.com.

Hi, Thanks works like magic. BTW What is the confidence ellipses probability used? -- View this message in context: http://r.789695.n4.nabble.com/LDA-and-confidence-ellipse-tp4671308p4671357.html Sent from the R help mailing list archive at Nabble...

Dear Bioconductor team, I found that the new R version 3.5.1, to be used with the new release of Bioconductor, supports the ?NEWS.md? files. I updated my package (BioCor) to use `NEWS.md`. However, on the devel...

Hi, On Writing R Extensions there is a footnote [6] about the "Date" field on the DESCRIPTION file being required by CRAN: "required by CRAN, so checked by R CMD check --as-cran" I think this is no longer up...

Hello, Some weeks ago the experDesign package was released on CRAN: https://CRAN.R-project.org/package=experDesign The package helps designing experiments to avoid batch effects confounding the result by distributing the samples on batches according to their features...

Hi, How can I add to LDA ggplot axes the Percentages of variance explained? Script: /require(MASS) require(ggplot2) iris.lda<-lda(Species ~ Sepal.Length + Sepal.Width + Petal.Length + Petal.Width, data = iris) datPred<-data.frame(Species=predict(iris.lda...

Hi all, I recently proposed a change in R that has led to the addition of new code to the R source code. The code added, as far as I know, has no tests and it might affect many packages...

Dear all, I'm looking into the impact of two packages and I want to check Bioconductor packages that depend on them (around 130). There are some functions to retrieve information about CRAN with the current packages and all the...

Hi all, It has come to my attention that there is a new post on The R blog: "R Can Use Your Help: Testing R Before Release". However, the link returns an error "Not found": https://developer.r-project.org...

Dear developers, The package I maintain (BioCor) builds correctly on malbec1 (Linux) and veracruz1 (OS X) in the development but not in tokay1 (Windows machine) server. It timesout. I am not sure what causes this, I don't fetch anything...

Hello, Some weeks ago the experDesign package was released on CRAN: https://CRAN.R-project.org/package=experDesign The package helps designing experiments to avoid batch effects confounding the result by distributing the samples on batches according to their features...

Hi, I wish to add confidence ellipse on my LDA result of the iris data set. Therefore: Is there statistical logic to do that as I only wish it to make the species separation more visable? How can I add...

Hi Witek, Probably it is a false positive, caused by a commented VignetteEngine on https://github.com/protViz/prozor/blob/master/vignettes/TargetDecoyFDR_Example.Rmd#L16 If you delete it (and the line below to be sure) I guess it...

Hi, Recently I was looking how package reviews are done. Specifically those packages from developers on the Bioconductor team, or listing the Bioconductor Package Maintainer as the maintainer. Some of those packages become the backbone of other packages and perhaps...

Hi all, Since Bioconductor has moved to git, packages don't have the coverage badge. This was supposed to have been corrected some weeks ago ( https://stat.ethz.ch/pipermail/bioc-devel/2017-October/012142.html). However it wasn't...

Hi list, I am developing a package that will download some data, and I'd like to store it locally to not recalculate it often. The CRAN policy requires tools::R_user_dir to be used and "the contents are...

Hi, While checking this, I realized that https://support.bioconductor.org/mytags/ doesn't show the tags I have in my profile as "My Tags" and as "Watched Tags". Not sure if it is related. Best, Llu?s On Thu...

Dear Lori and all, Some years ago there was a coverage badge, which disappeared when transitioning to git. Afterwards there were some mails about including the coverage badge on package's landing page again ( https://stat.ethz.ch/pipermail/bioc...