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Hi, https://bioconductor.org/checkResults/3.19/bioc-mac-arm64-LATEST/ Regards, Martin On Wed, Jan 24, 2024 at 5:55?PM Kasper Daniel Hansen < kasperdanielhansen at gmail.com> wrote: > We're clearly producing binary builds for Apple Silicon. Why...

Hi, Last week we updated R from 4.3.0 to 4.3.1 with empty site-library/ folder. All packages are being re-installed and some of them timed out. I just checked and both klaR and org.Hs...

Hi, On Thu, 22 Aug 2024 at 18:12, Dongyi Lu <dl3764 at columbia.edu> wrote: > Hi, > > My packages have been failing R CMD check on the Bioc server on Mac because > of this error: > > unable to load shared object...

Dear Daoyu, I can reproduce the test failure at kunpeng2 build runner! I'd be happy to test any suggestions you might have! Regards, Martin On Fri, Sep 22, 2023 at 6:34?PM Daoyu Duan <dxd429 at case.edu...

Hi, https://pypi.org/project/tensorflow/2.10.0/#files is the first release that provides a wheel for Linux ARM64 (aarch64). Would it be OK to update from 2.8.0 to 2.10.0 ? Or even better to...

Dear community, Happy and successful new year! Appologies if this has been discussed before but https://stat.ethz.ch/pipermail/bioc-devel/ does not provide search facilities and my googling didn't help much! I'd like to ask whether...

Hi, On Wed, Oct 18, 2023 at 11:31?PM Tulip Nandu <Tulip.Nandu at utsouthwestern.edu> wrote: > Hi, > > I just got an email from the Bioconductor stating, > > According to the Multiple platform build/check report for BioC 3.18...

Hi, On Tue, 8 Aug 2023 at 12:32, Sitte, Maren <Maren.Sitte at med.uni-goettingen.de> wrote: > Dear Bioconductor Developers, > > > I received an email that my package "pwOmics" gets an error in the check > under Linux. > Install and...

Hi, I?ll check which package needs to be installed to provide libtbbmalloc! On Mon, 10 Mar 2025 at 13:19, Katja Danielzik < katja.danielzik at stud.uni-due.de> wrote: > Dear all, > > i have noticed that my package "MetaboDynamics...

Hi, Yesterday there was another email about Biostrings - https://stat.ethz.ch/pipermail/bioc-devel/2024-April/020395.html I thought it might be related to your problem. Regards, Martin On Thu, Apr 25, 2024 at 8:23?AM Ulrich...

Hi, > quickBamFlagSummary(eh[["EH8081"]]) see ?gDNAinRNAseqData and browseVignettes('gDNAinRNAseqData') for documentation loading from cache [E::hts_hopen] Failed to open file /home/biocbuild/.cache/R/ExperimentHub/1d1f2d2a8e1eab_8133 [E::hts_open_format] Failed to open file "/home/biocbuild/.cache/R...

Hi, This has been fixed earlier today. It should be OK in the next run (tomorrow). Regards, Martin On Fri, 25 Oct 2024 at 17:47, Nguyen, Trinh (NIH/NCI) [C] via Bioc-devel < bioc-devel at r-project.org...

Hi, Installed the tbb-devel package! The next build should be fine! Thanks for the report! Regards, Martin On Mon, Mar 10, 2025 at 1:39?PM Martin Grigorov <mgrigorov at apache.org> wrote: > Hi, > > I?ll check which package...

Hi, 3.17 (release) has been frozen: https://stat.ethz.ch/pipermail/bioc-devel/2023-October/019920.html https://stat.ethz.ch/pipermail/bioc-devel/2023-October/019928.html Regards, Martin On Tue, Oct 17, 2023 at 6:59?AM...

Hi, If you hover over the red LED you will see the following hint: NO, package depends on 'miRBaseConverter' which is not available" Regards, Martin On Mon, Nov 13, 2023 at 11:31?AM James Perkins <jimrperkins at uma.es...

Hi, On Mon, 8 Jul 2024 at 11:14, Rodrigo Arcoverde Cerveira < rodrigo.arcoverdi at gmail.com> wrote: > Hi all, > > We are trying to implement a new tool in scifer package, and I have a few > questions about compatibility and...

Hi again, I tried to find the problem by (un)installing any (pip) global installations of pandas, leidenalg, umap-learn, igraph and python-igraph, and then installing them with biocbuild's pip, i.e. non-root user, via reticulate but...

Hi , ReactomeGSA.data package fails to install because it depends on leiden and Seurat > BiocManager::install("ReactomeGSA.data", force = TRUE) Bioconductor version 3.19 (BiocManager 1.30.22), R Under development (unstable) (2024-01-16 r85812) Installing package(s) 'ReactomeGSA...

Hi, Here is the issue - https://github.com/TomKellyGenetics/leiden/issues/26 I realized that we have discussed it a few months back! Martin On Sun, Feb 4, 2024 at 10:27?PM Martin Grigorov <martin.grigorov at gmail.com...

Hi Oleksii, On Wed, Oct 23, 2024 at 9:47?AM Oleksii Nikolaienko < oleksii.nikolaienko at gmail.com> wrote: > Hi Martin, > could you please also install libz-dev or zlib1g-dev (not sure which one > is needed)? - > https://bioconductor.org...