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Dear all, sorry to keep asking but I did not solve the problem yet and I cannot figure out how to fix it. I copied the ssh key, generated, after activating the bioc credentials, in the ~/.ssh/id_rsa.pub...

Dear All, I am the mantainer of the DaMiRseq package. I got these Warnings in the Bioconductor Build/Check system but not locally: ** running examples for arch 'i386' ... WARNING Found the following significant warnings: Warning: working directory was changed to...

Dear all, I am the maintainer of the DaMiRseq package. For several days, my package is in ERROR status, only for merida2 (OS X 10.11.6 El Capitan / x86_64) in the devel release. I tried to trace the...

Dear Bioc team, I?m the mantainer of the DaMiRseq package. About a week ago, the BUILD ended up in ERROR in the stable release (3.6). The error occurs in each platform during the creation of the vignette. Here...

Hi, My package DaMiRseq fails to build in veracruz2 server with this error: Quitting from lines 424-428 (DaMiRseq.Rnw) Error: processing vignette 'DaMiRseq.Rnw' failed with diagnostics: object 'R_svmtrain' not found Moreover, this message appeared in latest nightly...

Dear All, I am the mantainer of the DaMiRseq package. I performed some relevant modificantions in the package (i.e. added functions, added the CITATION file, updated vignette and NEWS file) and now I'm ready to push (from a...

I fixed some Github stuffs, related to the generation of token for the authentication, and now I can communicate with the DaMiRseq package at https://github.com/BioinfoMonzino/DaMiRseq (origin master); however, I got again the same (connection) problem when...

Hi Nitesh, I read but I just wanted to be sure. So, I typed: git pull upstream master Update the Version in DESCRIPTION git add . git commit -m "new message" git push upstream master and, I hope that everything will...

Sorry, but I really do not remember. Probably Yes! when we moved from SVN to GIT, I used my istitutional mail. However, I have never had problems in the past updating my packages by GitBash. How can I fix it...

Dear Nitesh, thank you! Now it seems to work perfectly. I will check the effect tomorrow after the nighty build. Just another little question, related with my issue: I solve it using git merge --allow-unrelated-histories upstream/master And...

Dear all, I have seen that my package (DaMiRseq) is in status "ERROR" after my last little modifications. It's a bit strange for me because locally everything is all right. Looking at the build report ( http://bioconductor.org/checkResults...

Dear all, I am the mantainer of the DaMiRseq package. I have some problems with GIT: I filled the form for ssh key some weeks ago and I guess everthinks is ok. $ git remote -v origin https://github.com/BioinfoMonzino...

Thank you Martin for your reply. You are right: some files were not OK. Now ?build and check? end up without any errors. I pushed again in both repositories. Inviato da Posta<https://go.microsoft.com/fwlink/?LinkId=550986> per...

Sorry Nitesh but maybe I missed something. I activated Bioc Credential; I checked the ssh keys in .ssh/id_rsa.pub (before generating a newest one) and it was the same in my BiocCredential profile. I changed the mantainer's...

Dear all, I need to update my package (DaMiRseq<https://www.bioconductor.org/packages/release/bioc/html/DaMiRseq.html>) in order to fix a bug that makes the package fail in devel and release. I tried, as usual, to pull...

Finally, I did it! The problem was probably due to the connection policies of my institution. Now, I cloned and set repos on my laptop and generated new keys; thus, under a different network, I could pull and push. @Shepherd...

Dear all, we looked at the traceback(): 7: array(STATS, dims[perm]) 6: aperm(array(STATS, dims[perm]), order(perm)) 5: sweep(WW[, 1:opt.comp], 2, Q2TT, "*") 4: apply(sweep(WW[, 1:opt.comp], 2, Q2TT, "*"), 1, sum) 3...