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Hi all, I am getting a strange error in the check of my package recoup in the current dev branch. https://master.bioconductor.org/checkResults/3.15/bioc-LATEST/recoup It seems that the error is originated by the tests...

Hello, Indeed there seems to be a global schema change regarding external_gene_id to the latest versions of most Ensembl supported organisms which affected also my package metaseqR. One solution is to change the host in the useMart function...

Dear all, For some time now, my package metaseqR fails to pass the checks at the build system http://bioconductor.org/checkResults/3.6/bioc-LATEST/metaseqR/ Although I am not sure I understand the source of the problem (all...

Hi all, I would like to add also metaseqR in the list of packages failing to build in malbec1 and morelia because of vsn. What would be the most appropriate course of action for the maintainers? Wait for vsn to...

Hello, In the previous Bioconductor release (2.14), a countData object from the baySeq package could be accessed by sample names. Now it seems that it can be accessed only by indices (version 2.0.50). Was this done on...

Dear developers, I maintain two packages (metaseqR, recoup) and about to submit an enhanced (but different in many points, thus a new package) version of the 1st (metaseqR2). During their course of development, maintenance and usage, these packages have somehow...

Dear Kasper and Herv?, Thank you for your feedback and apologies for reviving such an old thread. Herv?, you are right, apologies for the confusion in the message title and content, it is a software package for creating/retrieving specific...

Thank you Martin! I had missed that part. Indeed maybe you can update the instructions for non-git masters (like me). On Fri, Aug 25, 2017 at 1:14 PM, Martin Morgan < martin.morgan at roswellpark.org> wrote: > On 08...