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Dear Allan, Thank you very much! Sometimes the forest is difficult to see when you are looking at the trees only... as we would say... With kind regards Johannes

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I would like to change to size of the names in a cluster dendrogram (not the axis or the header) (package clue). The "normal" things (pch, cex.label, font) do not work here. Thanks in advance! Johannes

Dear all, does anybody know a package or solution which incorporated one of the three algorithms to build consensus clusters, proposed by Nguyen & Caruana: - iterative voting consensus (ivc) - iterative probabilistic voting consensus (ipvc) - iterative pairwise consensus (ipc) Thanks in advance...

Dear R-list, another question trying to build consensus cluster ;-) Using the package "clue" I have found a method of building consensus clusters the following way from one distance matrix: clust1 <- c("ward", "single", "complete", "average", "mcquitty", "median", "centroid") clust...

Dear all, I am trying to calculate barriers with the monmonier algorithm (adegenet). mon1 <- monmonier(mycoordinates, mydistancamatrix, network$cn, ...) The network beforehand looked alright. However, I always get the error: "cn is not a nb object". I am not really...

Dear List members, I would like to test whether an observed occupancy of lakes in a landscape has occurred randomly (by chance) or not. How can I do that? The problem is that it concerns only a single species and...

Dear List members, I would like to test whether an observed occupancy of lakes in a landscape has occurred randomly (by chance) or not. How can I do that? The problem is that it concerns only a single species and...

Dear R-helpers, I would like to export hierarchical clusters e.g. fit <- hclust(d, method="ward") in the newick format write(hc2Newick(fit),file='hclust.newick') Searching for a possibility I found this solution in the package ctc (http...

Sorry for probably again an easy question but I can not find the solution... Using the ade4 package I am drawing a triangular graph: triangle.plot(data2, label = row.names(data2), clab=0.6, show.position=FALSE, box=FALSE) Which...

Dear R helpers, I have a data set with 4 types (W, C, E & S). Now I have values for all types plus all possible combinations (the order is unimportant): W, C, WC, E, WE, CE, WCE, S, WS, CS...

Dear adegenet users, I am trying to calculate geographical barriers using "monmonier". However, I consistently get the error "dimnames do not match array extent". - import of the distance matrix: read.table - conversion 1: as.dist(data, diag=TRUE, upper =TRUE...

Dear R-helpers, conducting different community ecology analyses my main aim is to find groupings in the data and geographical borders between communities and to prove them statistically. So after conducting a global test (Mantel) I am running a NMS...

I tried for example: Plot(mycluster, font=2) But this changes only the font size of the y-axis. Regards Johannes -- Project Coordinator BIOTA West Amphibians Museum of Natural History Dep. of Research (Herpetology) Invalidenstrasse 43 D-10115 Berlin Tel...

Thanks a lot! That is exactly what I was looking for! Best wishes Johannes -- Project Coordinator BIOTA West Amphibians Museum of Natural History Dep. of Research (Herpetology) Invalidenstrasse 43 D-10115 Berlin Tel: +49 (0)30 2093 8708 Fax: +49...

Dear Prof. Oksanen, thank you very much for the quick reply! I will try to give more details on the problem. The data is from a colleague and she is investigating what are the responsible factors (environmental and genetic) for...