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43 results for “from:Rafael A. Irizarry”

google
Rafael A. Irizarry · Jan 26, 2003 · r-help

fyi, I typed "R" in google and hit the "I'm feeling lucky botton"... it took me to http://www.r-project.org -rafael ps - toysrus.com is second.

hclust
Rafael A. Irizarry · Jul 2, 2004 · r-help

im using plclust and want the labels to be different colors. i took a look at getS3method("plot","hclust") and saw a call to .Internal. i looked at the help on .Internal and dont know where to go next. any...

sweave quesiton
Rafael A. Irizarry · Apr 7, 2003 · r-help

if i write a funciton like this f <- function(x) Sweave("report.Rnw") and report.Rnw has an R chunk like this: <<>>= print(x) @ i get an error: 'Object "x" not found'. is there a way to avoid this without...

current env
Rafael A. Irizarry · Apr 5, 2004 · r-help

i want to do something like this: f <- function(){ data(iris) } and have f() not leave iris in the global env. i can see there is a env argument in data() but i dont know what to send it so...

CMYK
Rafael A. Irizarry · Nov 26, 2002 · r-help

hi! i need to submit electronic figures to a journal that satisfy the following requirement: "Colour figures must be supplied in CMYK not RGB colours." can i produce graphs in R that satisfy this? thanks, rafael -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list...

loess' robustness weights in loess
Rafael A. Irizarry · Apr 9, 2004 · r-help

hi! i want to change the "robustness weights" used by loess. these are described on page 316 of chambers and hastie's "statistical models in S" book as r_i = B(e_i,6m) where B is tukey's biweight...

sweave problem
Rafael A. Irizarry · Sep 10, 2003 · r-devel

hi! using: Version 1.8.0 Under development (unstable) (2003-09-02) using the Sweave function of the tools package i get this error when latexing with texi2dvi --pdf ! LaTeX Error: File `upquote.sty' not found. if i change the...

Sweave question
Rafael A. Irizarry · Dec 23, 2003 · r-help

Using Sweave in the tools library (R version 1.8.0: sorry i havent upgraded), it seems i cant use if statements in R chunks that make graphs. i have this: <<fig=TRUE,echo=F>>= par(mfrow=c(1,1...

surprising revelation
Rafael A. Irizarry · Feb 18, 2004 · r-help

apologies for the off-topic mail but i cant resist sharing this: >From CNN: (http://www.cnn.com/2004/ALLPOLITICS/02/18/elec04.prez.bush.jobs.ap/index.html) "The White House backed away Wednesday from its own prediction that...

Quit asking me if I want to save the workspace!
Rafael A. Irizarry · Sep 16, 2003 · r-help

you can type this: q("no") see the help file for q On Wed, 17 Sep 2003, Murray Jorgensen wrote: > How do you stop R from putting up a dialog box when you quit Rgui? > (I use Windows and I...

[Bioc-devel] Tiling array data
Rafael A Irizarry · Oct 18, 2006 · bioc-devel

oligo has a class for tiling arrays.currently i use it to open affy and nimblegen arrays. Sean Davis wrote: > All, > > I, like probably multiple others, am working with tiling array data. I > currently use my own relatively simple (but...

small ps
Rafael A. Irizarry · Jun 20, 2002 · r-help

Ive created a postscript files that looks just like I want it to look except instead of being 6'' x 6'' i want it to be 2''x 2''. i used the postscipt() function (R 1.5.1 on redhat...

[Bioc-devel] Biocore Team maintainers for some packages
Rafael A. Irizarry · Mar 16, 2006 · bioc-devel

can you add geneplotter? On Thu, 16 Mar 2006, Martin Morgan wrote: > The 'Maintainer' field on several packages has been changed to > 'Biocore Team'. This is meant to encourage Biocore members to fix bugs > and make improvements. > > The email address...

extra 0 in ccf
Rafael A. Irizarry · Jun 11, 2002 · r-help

im using R 1.5.0 on redhat. when i use ccf in the ts library i get, what i think is, an incorrect entry in the lag and acf components. as an example, look at the second entry in...

X'W in Matrix
Rafael A. Irizarry · Jun 8, 2006 · r-help

Hi! I have used the Matrix package (Version: 0.995-10) successfully to obtain the OLS solution for a problem where the design matrix X is 44000x6000. X is very sparse (about 80000 non-zeros elements). Now I want to...

correlation
Rafael A. Irizarry · Aug 21, 2002 · r-help

take the cov of the transpose if "x" is your matix: cov(t(x)) On Wed, 21 Aug 2002, Laurence Richard wrote: > Dear All, > > I have a file (a matrix) on which I have to compute the correlations. > The function...

[Bioc-devel] Biobase eSet and exprSet validation
Rafael A. Irizarry · Feb 2, 2006 · bioc-devel

i agree that we should get rid of exprSet. the oligo package uses the eSet exclusiveley. but we need to be very careful not lose functionailty, for example, i know that exprs<- does not exist for eSet. i suspect this...

insert eps into microsft word
Rafael A. Irizarry · Sep 10, 2003 · r-help

for word documents submitted to picky journals i usually use seomthing like this: bitmap("plot_1.png",width=6,height=6,res=600,pointsize=12,family="Times") on my computer this resutls in quality just as good (to mu eye...

[Bioc-devel] Subsetting affybatch and exprset objects
Rafael A. Irizarry · Apr 13, 2004 · bioc-devel

even better. unless there are other concerns ill put this on my todo list. On Tue, 13 Apr 2004, Vincent Carey 525-2265 wrote: > > > the problem is th if you subset eset by the first dimension then you > > loose the...

affymetrix files
Rafael A. Irizarry · Jan 21, 2002 · r-help

On Mon, 21 Jan 2002, Pauline Mattsson wrote: > Perl program, some kind of interface. How can I do this? My second question is > where can I find the R package translating the affymetrix cel files with the > help of affymetrix...

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