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Hi, I just cleaned up my git history using bfg for a package I have under review (`memes`: https://github.com/Bioconductor/Contributions/issues/1997). If I could get some help pushing the cleaned up repo to the spb I...

Sorry to ping about this twice, but my guess is this got buried over the long weekend. I need some help getting a cleaned up repo force pushed to the bioconductor repository ( git at git.bioconductor.org:packages/memes ). This...

I agree with Martin. I think it is worse for beginners to falsely believe their results are deterministic when they are not. This sounds like a problem that should be solved with documentation and maybe even examples of setting the...

My strong suspicion is this is because curl does not support AIA via openSSL on Linux. But browsers will use AIA (hence the reports of Firefox, etc working). Here's an old GitHub issue referencing the problem though it's...

Hi all, I maintain the `{memes}` package that interfaces with the MEME Suite toolkit. I just noticed a failing build in devel because the meme suite was installed on the builders (thank you!!), and it is missing a perl module...

This GitHub issue, although lengthy, discusses some of the technical difficulties associated with pulling from the random stream. I've linked to a comment from Martin that discusses this in particular, but there's other good stuff in the rest...

Hi Fabricio, For another bit of practical advice (in particular, guarding against missing dependencies on user machines), you may also find it helpful to export a few `x_is_installed()` functions that return TRUE/FALSE if a dependency is missing...

Thanks so much! The build is working now! Cheers! - Spencer On Thu, Sep 26, 2024, 4:03?PM Jennifer Wokaty <Jennifer.Wokaty at sph.cuny.edu> wrote: > Hi Spencer, > > Thanks for your message. > > I've installed the missing Perl modules...

Hi all, Related to the recent discussion of packages building "fake" docs, I wanted to call myself out here as being guilty of it and discuss how to mediate the issue. In my case, the {memes} package ( https://bioconductor.org...

Hi Vince, Thanks for the thoughtful reply. I agree about the license in this case being an issue, too. I agree having builder images available could be very helpful for dev purposes. What I have done for my own testing...