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Hi, Could someone tell me about the possible causes of "...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED..." message for OS X Mavericks? http://www.bioconductor.org/checkResults/devel/bioc-LATEST/ Mavericks is the OS I developed my package on. Thank you...
Some Bioconductor packages depend on CRAN XML package. For example http://bioconductor.org/checkResults/devel/bioc-LATEST/mzID/tokay2-install.html This dependency is not available on tokay2 machine. I also noticed this XML package is orphaned on CRAN. What...
Hi, I'm making an interface, where a Tcl/Tk window have few listbox widgets. I need to select separate parameters from separate listboxes. It is clear how to get cursor selection value, once you know which listbox widget you...
Hi, I'm making an interface, where a Tcl/Tk window have few listbox widgets. I need to select separate parameters from separate listboxes. It is clear how to get cursor selection value, once you know which listbox widget you...
While resolving conflicts according to this protocol https://master.bioconductor.org/developers/how-to/git/resolve-conflicts/ I ran into a quite a number of seeming duplications of the file content between HEAD and upstream/master. It looks like either...
My package passes all the builds except OS X. http://www.bioconductor.org/checkResults/devel/bioc-LATEST/MSnID/veracruz2-buildsrc.html Interestingly, the build goes just fine (with the same arguments) on my laptop, which is OS X 10.12...
Hi all, I ran into a problem with dependencies during package installation. Here is an example that intends to reproduce the problem https://github.com/vladpetyuk/toypack Majority of the packages (in Imports/Depends/Suggests and their Imports/Depends/Suggests...
Are there going to be any noticeable changes for the package users? Does it break compatibility? Do I need to install something extra (like ProteoWizard)? On Tue, May 23, 2017 at 9:10 AM Laurent Gatto <lg390 at cam.ac...
Hi, Are there any multidimenstional versions of runmed() and smooth.spline() functions? I need to fit surface into quite noisy 3D data. Below is an example (2D) of kind of fittings I do. Thank you, Vlad #=generating complex x,y...
Just added the full output to the README.md file https://github.com/vladpetyuk/toypack/blob/master/README.md On Thu, Jun 25, 2015 at 12:28 PM, Dan Tenenbaum <dtenenba at fredhutch.org> wrote: > > > ----- Original Message ----- > > From: "Vladislav Petyuk...
the issue posted https://github.com/hadley/devtools/issues/864 On Fri, Jun 26, 2015 at 2:36 PM, Vladislav Petyuk <petyuk at gmail.com> wrote: > It looks like devtools::package_deps is forcing type to be "binary". > if (identical...
It looks like devtools::package_deps is forcing type to be "binary". if (identical(type, "both")) { type <- "binary" } > devtools::package_deps function (pkg, dependencies = NA, repos = getOption("repos"), type = getOption("pkgType")) { if (identical(type, "both")) { type <- "binary" } if (length(repos...
Here is the link I was using. https://docs.google.com/forms/d/e/1FAIpQLSdYJ86-qpStdbbcPzFFXO4_XWnN8DvF2dOgNLE_iWNd0J-g8g/viewform On Tue, Oct 10, 2017 at 1:28 PM Vladislav Petyuk <petyuk at gmail.com> wrote: > done > > On Tue, Oct...
done On Tue, Oct 10, 2017 at 1:24 PM Turaga, Nitesh < Nitesh.Turaga at roswellpark.org> wrote: > Please resubmit. > > > > On Oct 10, 2017, at 4:24 PM, Turaga, Nitesh > <Nitesh.Turaga at RoswellPark.org> wrote: > > > > We do not have...
I concur on "peaks" vs "scans" or "spectra" issues. One have to run peak picking algorithm to get peaks out of a spectrum. Therefore I'd vote for "spectra". On Tue, Nov 18, 2014 at 12:23 AM, Thomas Lin...
Done. Do you see it? On Tue, Oct 10, 2017 at 1:37 PM Turaga, Nitesh < Nitesh.Turaga at roswellpark.org> wrote: > I believe you have the wrong form. > https://docs.google.com/forms/d/1CCwUhjtG82rnmcTWYqY43WcmBx5YyQm5UD4pcs1dhEs > (this is the correct...
Yes! Now it works. Thank you! On Tue, Oct 10, 2017 at 2:01 PM Vladislav Petyuk <petyuk at gmail.com> wrote: > Done. Do you see it? > > On Tue, Oct 10, 2017 at 1:37 PM Turaga, Nitesh < > Nitesh.Turaga...
Dan, Herve, thanks for taking a look. This gives some leads. On Thu, Jun 25, 2015 at 7:26 PM, Dan Tenenbaum <dtenenba at fredhutch.org> wrote: > > > ----- Original Message ----- > > From: "Herv? Pag?s" <hpages at fredhutch.org> > > To: "Vladislav Petyuk...
Yes, the issue is the same if I use devtools::install_github("vladpetyuk/toypack", build_vignettes=TRUE, dependencies=TRUE) I posted on Bioc-devel list because all the problematic packages are suspiciously similar - all related to Bioconductor and deal with...
There are different ways set.seed can be used. The way it is suggested on the aforementioned stackoverflow post is basically a two stage process. First seed is provided by a user (set.seed(1)). That is user can change...
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