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Hi, I am trying to use git to access CRISPRseek. However, it asks for passphrase. I was able to do this without entering the passphrase a couple of months ago. Could you please help? Thanks! git clone git at git...

Michael, For some reason, adding except clause in import in the NAMESPACE file gives error on window server, although it runs fine on Linux and Mac OS X. http://bioconductor.org/checkResults/devel/bioc-LATEST/CRISPRseek/moscato2-buildsrc.html Here...

Martin, The lab, who developed the GUIDE-seq protocol, just published a python tool called guideseq in Nature Biotechnology, which is too similar to our Bioconductor package name GUIDEseq. I am wondering if there is an easy way to change...

Hi, I need to fix a bug in the development and released version of CRISPRseek. So far, I have successfully updated the dev version of CRISPRseek following the guides at https://www.bioconductor.org/developers/how-to/git/maintain-bioc...

Hi all, I encountered the following error when trying to use git clone or git push for git at git.bioconductor.org:packages/CRISPRseek ############################################################################# git clone git at git.bioconductor.org:packages/CRISPRseek Cloning into 'CRISPRseek'... git at git.bioconductor...

Dear Nitesh, I submitted my ssh keys. However, I cannot download my packages from github. Could you please help? Thanks! ##### juliezhumac2017:Trunk ZHUJ$ git clone git at git.bioconductor.org:packages/CRISPRseek Cloning into 'CRISPRseek'... Permission denied (publickey). fatal: Could...

Hi, When I search ChIPpeakAnno using google web site, the first hit is the following URL. But when I click on the URL, I got the error "The requested URL was not found on this server". I am wondering if...

Hi, Is there a function to import all the exported objects from a package except a few named ones in NAMESPACE file? For example, I would like to import all the functions in S4Vectors except fold. Is there a way...

Dear Developers, I encountered the following error. The error seems indicating that pdflatex is not available despite the fact that I have been running R CMD check many times without any problem. Any advice/suggestion would be very much appreciated...

Hi, I just noticed that the released version of GUIDEseq failed at build stage, which did not occur previously and I did not make any change to the release version. The error points to the GAlignmentPairs container. Is this an...

Thanks, Dario! That would be one way to deal with this if I had seen the other software before its Nature Biotechnology publication. FYI, we will stick to our original name if reviewers are ok with it. Best, Julie > On...

Never mind, I recovered my key and that fixed it. Thanks! Best regards, Julie ?On 6/18/19, 5:39 PM, "Bioc-devel on behalf of Zhu, Lihua (Julie)" <bioc-devel-bounces at r-project.org on behalf of Julie...

Dear Bioconductor Core Members, I hope this message finds you well. I am writing to request the addition of a new developer to the CRSIPRseek repository on Bioconductor. The new developer, Dr. Kai Hu (cced), is an experienced R developer...

Dan, I recently noticed that GUIDEseq page has a error build status at http://bioconductor.org/packages/release/bioc/html/GUIDEseq.html. Oddly, the error only occurs in the window server. Is this something related to the window server solvable...

Thanks, Dan! Best, Julie On 4/11/16 12:22 PM, "Dan Tenenbaum" <dtenenba at fredhutch.org> wrote: >The windows machine is still running an older version of R that does not >support this NAMESPACE syntax. I will update it...

Nitesh, Thanks for fixing the issue! It works now. Best regards, Julie ?On 10/11/18, 1:55 PM, "Bioc-devel on behalf of Jianhong Ou, Ph.D." <bioc-devel-bounces at r-project.org on behalf of jianhong.ou...

Nitesh, I encountered the same issue with CRISPRseek package. Could you please help? Thanks! To git.bioconductor.org:packages/CRISPRseek.git ! [remote rejected] master -> master (pre-receive hook declined) error: failed to push some refs to 'git at git.bioconductor...

Dear developers, I encountered a strange merge problem and hope you can help me to understand why this is happening and how to resolve it. r3 and z1 are both data frames produced inside a function, when I try to...