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Hi All, I need your help in making the violin plot in R using the data which is attached herewith. I am new to R and having issues in tidying my data for R. I am trying the code but...

Hi All, I have 10 .csv files containing 12 to 15 columns but have some columns in common. I need to join all of my .csv files into one using one common column ?Pos?. The header portion of my .csv...

YOUNGCONTROL.csv <https://drive.google.com/file/d/1arQqlzkRJybclikAByB9w9TCnvmD_Y46/view?usp=drive_web> YOUNGTREATED.csv <https://drive.google.com/file/d/1vMidiGmoK4zsYjvf2sT9RbjwF72W0IhO/view?usp=drive_web> Hi I have attached the three different datasets for Rn6 genome and I...

Hi All, I have a .csv file with four columns (Chrom, Start_pos, End_pos & Value). The value column range from 0 to 1.0 having more than 2.8 million rows. I need to write a code from which...

Hi All, I have attached the three different datasets for Rn6 genome (rat) and I needed to use circos plot by *circlize package in R*. Please anyone help me in writing the code and making the plot. Any help will...

---------- Forwarded message --------- From: pooja sinha <pjsinha07 at gmail.com> Date: Fri 24 Jan, 2020, 15:06 Subject: Problem in plotting Circos plot with the attached dataset To: <r-help at r-project.org> YOUNGCONTROL.csv <https://drive.google.com/file...

Hi All, I am trying to extract gene list from chromosome number and position, for that I am using biomaRt in R but I am getting error messages as shown below. Also below is the code I am using for...

Hi All, I have a file list consisting of Chromosome, Start , End & Methylation Difference in the following format in excel: Chrom Start End Meth. Diff chr1 38565900 38566000 -0.20276818 chr1 38870400 38870500 -0.342342342 chr1 39469400 39469500 -0.250260552...

Hi All, I have gene expression data with differential fold change value and the file looks like as below: Chrom start_pos end_pos value 14 20482867 20496901 2.713009346 4 123712710 123718202 -2.20797815 13 80883384 80896042 1.646405782...

Hi All, I have data in excel with the following details: CHG_methylation Young_Control Young_Treated 0-10% 95.23 94.53 10-20% 3.71 4.16 20-30% 0.68 0.8 30-40% 0.18 0...

Thanks, I'll check it out. On Fri, Feb 7, 2020 at 1:08 PM Martin Morgan <mtmorgan.bioc at gmail.com> wrote: > Probably have more success asking on https://support.bioconductor.org. > > Martin Morgan > > ?On 2/7/20, 12...

Hi All, I have a data as shown below: TF YT_YC MT_MC AT_AC GRHL2 1e-2597 1e-2789 1.00E-281 Srebp1a 1e-1860 1e-1744 1e-944 EWS:ERG 1e-1831 1e-2127 1e-548 EWS...

Hi David, Sorry I forgot to attach the file. Now it's attached. Thanks, Puja On Thu, Apr 8, 2021 at 6:01 PM David Winsemius <dwinsemius at comcast.net> wrote: > > On 4/8/21 2:30 PM, pooja sinha...

Sorry I used limits in code and need to focus on both limits and breaks. On Wed, Feb 26, 2020 at 9:51 AM pooja sinha <pjsinha07 at gmail.com> wrote: > Hi All, > > I have a data as shown below...

It worked, initially I made some mistake. Thanks a lot. Trying to read basics of R. Puja On Fri, Jan 31, 2020 at 1:06 PM pooja sinha <pjsinha07 at gmail.com> wrote: > Thanks but it gives error "incorrect number...

Thanks but it gives error "incorrect number of dimensions". Best, Puja On Fri, Jan 31, 2020 at 11:37 AM K. Elo <maillists at pp.inet.fi> wrote: > Hi! > > To extract full rows, use: > > df[ ( (df$Value>=0.2 & df...

Thanks, I will do that. Puja On Fri, Apr 1, 2022 at 8:58 AM PIKAL Petr <petr.pikal at precheza.cz> wrote: > Hi. > > Beside advice of others, at least > > str(yourdata) > and the ggplot code is minimum for us...

Thanks for providing the code but I also needed the output sheet in .csv format with all the four columns corresponding to the value (Chrom, Start_pos, End_pos & Value ranging from what I specified earlier). Puja On Fri, Jan...

I know that but I do not want to merge them sequentially because I may lose some rows which are present in one file while the other doesn't have. I googled and found something called multmerge but the code...

Thanks for your suggestion and code. Puja On Sun, Feb 16, 2020 at 5:23 PM Rui Barradas <ruipbarradas at sapo.pt> wrote: > Hello, > > Your error is that you are not plotting the values in your file > See what is...