Bioc-devel September 2006

.First.lib error in beadarray

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7 msgs · Sep 13 – Sep 29

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Mark Dunning .First.lib error in beadarray Sep 13, 2006

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Seth Falcon .First.lib error in beadarray Sep 15, 2006

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Mark Dunning .First.lib error in beadarray Sep 17, 2006

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Mark Dunning .First.lib error in beadarray Sep 25, 2006

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Hervé Pagès .First.lib error in beadarray Sep 26, 2006

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Mark Dunning .First.lib error in beadarray Sep 29, 2006

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Hervé Pagès .First.lib error in beadarray Sep 29, 2006

ANN: big change in graph package

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2 msgs · Sep 12 – Sep 13

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Seth Falcon ANN: big change in graph package Sep 12, 2006

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Wolfgang Huber ANN: big change in graph package Sep 13, 2006

BioC 1.9 Release Schedule now available

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1 msg · Sep 4

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Seth Falcon BioC 1.9 Release Schedule now available Sep 4, 2006

BioC 1.9 release branch CREATED

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1 msg · Sep 29

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Seth Falcon BioC 1.9 release branch CREATED Sep 29, 2006

BioC 1.9 release schedule

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2 msgs · Sep 26 – Sep 26

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James W. MacDonald BioC 1.9 release schedule Sep 26, 2006

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Seth Falcon BioC 1.9 release schedule Sep 26, 2006

BioC Package Search ALPHA

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3 msgs · Sep 20 – Sep 25

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Seth Falcon BioC Package Search ALPHA Sep 20, 2006

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Diego Diez BioC Package Search ALPHA Sep 20, 2006

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Seth Falcon BioC Package Search ALPHA Sep 25, 2006

BioC webserver rebooted

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1 msg · Sep 25

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Seth Falcon BioC webserver rebooted Sep 25, 2006

Bug? in AssayData

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4 msgs · Sep 20 – Sep 21

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Martin Morgan Bug? in AssayData Sep 20, 2006

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Oosting, J. (PATH) Bug? in AssayData Sep 21, 2006

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Seth Falcon Bug? in AssayData Sep 21, 2006

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Martin Morgan Bug? in AssayData Sep 21, 2006

Build/check questions

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3 msgs · Sep 21 – Sep 22

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James W. MacDonald Build/check questions Sep 21, 2006

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Hervé Pagès Build/check questions Sep 21, 2006

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Seth Falcon Build/check questions Sep 22, 2006

Change in BioC 1.9 release schedule

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1 msg · Sep 15

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Seth Falcon Change in BioC 1.9 release schedule Sep 15, 2006

EBImage information resource

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1 msg · Sep 14

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Oleg Sklyar EBImage information resource Sep 14, 2006

FCS3.0 DiVa files?

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7 msgs · Sep 1 – Sep 6

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Byron Ellis FCS3.0 DiVa files? Sep 1, 2006

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Florian Hahne FCS3.0 DiVa files? Sep 4, 2006

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Byron Ellis FCS3.0 DiVa files? Sep 5, 2006

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Wolfgang Huber FCS3.0 DiVa files? Sep 5, 2006

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Byron Ellis FCS3.0 DiVa files? Sep 5, 2006

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Florian Hahne FCS3.0 DiVa files? Sep 6, 2006

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Byron Ellis FCS3.0 DiVa files? Sep 6, 2006

NAMESPACE woes

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1 msg · Sep 12

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Seth Falcon NAMESPACE woes Sep 12, 2006

NAMESPACE woes [was Re: Update on upcoming BioC 1.9 release]

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1 msg · Sep 12

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Paul Shannon NAMESPACE woes [was Re: Update on upcoming BioC 1.9 release] Sep 12, 2006

NEWS August 2006

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1 msg · Sep 1

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James W. MacDonald NEWS August 2006 Sep 1, 2006

New BioC 2.0 daily builds + packages removed from the BioC 1.9 builds

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1 msg · Sep 27

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Hervé Pagès New BioC 2.0 daily builds + packages removed from the BioC 1.9 builds Sep 27, 2006

New package: pkgDepTools

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1 msg · Sep 5

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Seth Falcon New package: pkgDepTools Sep 5, 2006

OSX 10.3.9, R, and Bioconductor universal binaries

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3 msgs · Sep 14 – Sep 14

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mark garey OSX 10.3.9, R, and Bioconductor universal binaries Sep 14, 2006

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Vincent Carey OSX 10.3.9, R, and Bioconductor universal binaries Sep 14, 2006

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mark garey OSX 10.3.9, R, and Bioconductor universal binaries Sep 14, 2006

Problem loading Biobase in newest R2.4 for windows

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3 msgs · Sep 8 – Sep 8

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Oosting, J. (PATH) Problem loading Biobase in newest R2.4 for windows Sep 8, 2006

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James W. MacDonald Problem loading Biobase in newest R2.4 for windows Sep 8, 2006

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Seth Falcon Problem loading Biobase in newest R2.4 for windows Sep 8, 2006

QC - again

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1 msg · Sep 22

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Robert Gentleman QC - again Sep 22, 2006

Rdbi namespace issue

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6 msgs · Sep 21 – Sep 21

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Sean Davis Rdbi namespace issue Sep 21, 2006

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Sean Davis Rdbi namespace issue Sep 21, 2006

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John Zhang Rdbi namespace issue Sep 21, 2006

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Seth Falcon Rdbi namespace issue Sep 21, 2006

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John Zhang Rdbi namespace issue Sep 21, 2006

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Sean Davis Rdbi namespace issue Sep 21, 2006

Recent / forthcoming changes to Biobase

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1 msg · Sep 4

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Martin Morgan Recent / forthcoming changes to Biobase Sep 4, 2006

Reminder: BioC 1.9 release deadline TOMORROW

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1 msg · Sep 28

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Seth Falcon Reminder: BioC 1.9 release deadline TOMORROW Sep 28, 2006

Unexpected source() behavior in R-devel

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2 msgs · Sep 3 – Sep 4

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Henrik Bengtsson Unexpected source() behavior in R-devel Sep 3, 2006

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Seth Falcon Unexpected source() behavior in R-devel Sep 4, 2006

Update on upcoming BioC 1.9 release

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1 msg · Sep 9

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Seth Falcon Update on upcoming BioC 1.9 release Sep 9, 2006

[Bioc-devel] [Fwd: Re: ifnotfound in mget]

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1 msg · Sep 1

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Francois Pepin [Bioc-devel] [Fwd: Re: ifnotfound in mget] Sep 1, 2006

affyQA/QC

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7 msgs · Sep 22 – Sep 27

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Robert Gentleman affyQA/QC Sep 22, 2006

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Kasper Daniel Hansen affyQA/QC Sep 22, 2006

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David Henderson affyQA/QC Sep 22, 2006

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Gordon K Smyth affyQA/QC Sep 23, 2006

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James W. MacDonald affyQA/QC Sep 23, 2006

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Robert Gentleman affyQA/QC Sep 26, 2006

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Caroline Johnston affyQA/QC Sep 27, 2006

check failure: prerequisit package does not use NAMESPACE

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1 msg · Sep 14

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Paul Shannon check failure: prerequisit package does not use NAMESPACE Sep 14, 2006

check failure: prerequisit package does not use NAMESPACE

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3 msgs · Sep 14 – Sep 15

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Seth Falcon check failure: prerequisit package does not use NAMESPACE Sep 14, 2006

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Seth Falcon check failure: prerequisit package does not use NAMESPACE Sep 15, 2006

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Seth Falcon check failure: prerequisit package does not use NAMESPACE Sep 15, 2006

check failure: prerequisit package does not use NAMESPACE (was NAMESPACE woes)

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1 msg · Sep 14

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Paul Shannon check failure: prerequisit package does not use NAMESPACE (was NAMESPACE woes) Sep 14, 2006

daily package check - namespace or shadowing problems

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2 msgs · Sep 18 – Sep 20

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Wolfgang Huber daily package check - namespace or shadowing problems Sep 18, 2006

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Seth Falcon daily package check - namespace or shadowing problems Sep 20, 2006

help with package dependencies on packages in remote repositories

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3 msgs · Sep 15 – Sep 15

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Joern Toedling help with package dependencies on packages in remote repositories Sep 15, 2006

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Wolfgang Huber help with package dependencies on packages in remote repositories Sep 15, 2006

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Seth Falcon help with package dependencies on packages in remote repositories Sep 15, 2006

ifnotfound in mget

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2 msgs · Sep 1 – Sep 1

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Seth Falcon ifnotfound in mget Sep 1, 2006

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Seth Falcon ifnotfound in mget Sep 1, 2006

library and require with variable arguments in package code

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1 msg · Sep 15

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Wolfgang Huber library and require with variable arguments in package code Sep 15, 2006

permanent address for packages

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2 msgs · Sep 12 – Sep 12

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Sean Davis permanent address for packages Sep 12, 2006

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Seth Falcon permanent address for packages Sep 12, 2006

reposTools DEFUNCT in upcoming BioC 1.9 release

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1 msg · Sep 20

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Seth Falcon reposTools DEFUNCT in upcoming BioC 1.9 release Sep 20, 2006

some data packages available for testing

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2 msgs · Sep 8 – Sep 8

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Nianhua Li some data packages available for testing Sep 8, 2006

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Seth Falcon some data packages available for testing Sep 8, 2006

splots -- new package announcement

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4 msgs · Sep 13 – Sep 14

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Oleg Sklyar splots -- new package announcement Sep 13, 2006

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Steven McKinney splots -- new package announcement Sep 13, 2006

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Oleg Sklyar splots -- new package announcement Sep 14, 2006

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Steven McKinney splots -- new package announcement Sep 14, 2006

splots -- svn commit plotScreen.R - CORRECTED

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2 msgs · Sep 14 – Sep 14

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Oleg Sklyar splots -- svn commit plotScreen.R - CORRECTED Sep 14, 2006

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Hervé Pagès splots -- svn commit plotScreen.R - CORRECTED Sep 14, 2006

third time lucky

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1 msg · Sep 22

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Robert Gentleman third time lucky Sep 22, 2006