Bioc-devel - November 2011 - Thread View

[Bioc-devel] list -> AtomicList coercions

3 msgs Nov 29

Michael Lawrence list -> AtomicList coercions Nov 23, 2011

Hervé Pagès list -> AtomicList coercions Nov 29, 2011

Michael Lawrence list -> AtomicList coercions Nov 29, 2011

[Bioc-devel] Installing Geoquery on R version 2.13.1

8 msgs Nov 29

Radhika Malik Installing Geoquery on R version 2.13.1 Nov 28, 2011

Steve Lianoglou Installing Geoquery on R version 2.13.1 Nov 28, 2011

Radhika Malik Installing Geoquery on R version 2.13.1 Nov 28, 2011

Sean Davis Installing Geoquery on R version 2.13.1 Nov 28, 2011

Radhika Malik Installing Geoquery on R version 2.13.1 Nov 28, 2011

Steve Lianoglou Installing Geoquery on R version 2.13.1 Nov 28, 2011

Radhika Malik Installing Geoquery on R version 2.13.1 Nov 28, 2011

Martin Morgan Installing Geoquery on R version 2.13.1 Nov 29, 2011

[Bioc-devel] improvement to findOverlap for GRanges

3 msgs Nov 26

Kasper Daniel Hansen improvement to findOverlap for GRanges Nov 26, 2011

Michael Lawrence improvement to findOverlap for GRanges Nov 26, 2011

Kasper Daniel Hansen improvement to findOverlap for GRanges Nov 26, 2011

[Bioc-devel] os x binary

9 msgs Nov 20

Dan Tenenbaum os x binary Nov 14, 2011

Dan Tenenbaum os x binary Nov 17, 2011

Kasper Daniel Hansen os x binary Nov 17, 2011

Dan Tenenbaum os x binary Nov 17, 2011

Kasper Daniel Hansen os x binary Nov 17, 2011

Dan Tenenbaum os x binary Nov 17, 2011

Kasper Daniel Hansen os x binary Nov 17, 2011

Dan Tenenbaum os x binary Nov 17, 2011

Kasper Daniel Hansen os x binary Nov 20, 2011

[Bioc-devel] xcms build failure

1 msg Nov 19

Dan Tenenbaum xcms build failure Nov 19, 2011

[Bioc-devel] xcms build failure

1 msg Nov 19

Neumann, Steffen xcms build failure Nov 19, 2011

[Bioc-devel] package NEWS, README, and INSTALL files available on web site

1 msg Nov 18

Dan Tenenbaum package NEWS, README, and INSTALL files available on web site Nov 18, 2011

[Bioc-devel] Data Structure - Fixtures

2 msgs Nov 18

João Daniel Nunes Duarte Data Structure - Fixtures Nov 18, 2011

Michael Lawrence Data Structure - Fixtures Nov 18, 2011

[Bioc-devel] minfi preprocessIllumina Error

1 msg Nov 15

Dario Strbenac minfi preprocessIllumina Error Nov 15, 2011

[Bioc-devel] minfi preprocessIllumina Error

2 msgs Nov 15

Dario Strbenac minfi preprocessIllumina Error Nov 15, 2011

Kasper Daniel Hansen minfi preprocessIllumina Error Nov 15, 2011

[Bioc-devel] GSVA/configure.ac problem

1 msg Nov 15

Dan Tenenbaum GSVA/configure.ac problem Nov 15, 2011

[Bioc-devel] os x binary

1 msg Nov 14

Kasper Daniel Hansen os x binary Nov 14, 2011

[Bioc-devel] GSVA/configure.ac problem

5 msgs Nov 14

Robert Castelo GSVA/configure.ac problem Nov 7, 2011

Hervé Pagès GSVA/configure.ac problem Nov 9, 2011

Robert Castelo GSVA/configure.ac problem Nov 11, 2011

Dan Tenenbaum GSVA/configure.ac problem Nov 11, 2011

Robert Castelo GSVA/configure.ac problem Nov 14, 2011

[Bioc-devel] splitting one GRanges by another

3 msgs Nov 14

Vincent Carey splitting one GRanges by another Nov 14, 2011

Steve Lianoglou splitting one GRanges by another Nov 14, 2011

Vincent Carey splitting one GRanges by another Nov 14, 2011

[Bioc-devel] A call for feedback on writing S4 docs with roxygen

6 msgs Nov 11

Steve Lianoglou A call for feedback on writing S4 docs with roxygen Nov 11, 2011

Michael Lawrence A call for feedback on writing S4 docs with roxygen Nov 11, 2011

Vincent Carey A call for feedback on writing S4 docs with roxygen Nov 11, 2011

Steve Lianoglou A call for feedback on writing S4 docs with roxygen Nov 11, 2011

Colin A. Smith A call for feedback on writing S4 docs with roxygen Nov 11, 2011

Michael Lawrence A call for feedback on writing S4 docs with roxygen Nov 11, 2011

[Bioc-devel] BiocInstaller::getUpdatablePackages

2 msgs Nov 10

Wolfgang Huber BiocInstaller::getUpdatablePackages Nov 10, 2011

Martin Morgan BiocInstaller::getUpdatablePackages Nov 10, 2011

[Bioc-devel] affy package and non-square arrays

2 msgs Nov 10

Tim Rayner affy package and non-square arrays Nov 10, 2011

James W. MacDonald affy package and non-square arrays Nov 10, 2011

[Bioc-devel] affy package and non-square arrays

3 msgs Nov 10

Tim Rayner affy package and non-square arrays Nov 4, 2011

James W. MacDonald affy package and non-square arrays Nov 9, 2011

Mike Smith affy package and non-square arrays Nov 10, 2011

[Bioc-devel] Fwd: visualizing genomic data

1 msg Nov 9

Bogdan Tanasa visualizing genomic data Nov 9, 2011

[Bioc-devel] Error in biocLite(groupName="all") - unused argument(s) (groupName="all") on Linux and MacOS X platform

8 msgs Nov 9

Christian Kohler Error in biocLite(groupName="all") - unused argument(s) (groupName="all") on Linux and MacOS X platform Nov 8, 2011

Vincent Carey Error in biocLite(groupName="all") - unused argument(s) (groupName="all") on Linux and MacOS X platform Nov 8, 2011

Sean Davis Error in biocLite(groupName="all") - unused argument(s) (groupName="all") on Linux and MacOS X platform Nov 8, 2011

Michael Lawrence Error in biocLite(groupName="all") - unused argument(s) (groupName="all") on Linux and MacOS X platform Nov 8, 2011

Dan Tenenbaum Error in biocLite(groupName="all") - unused argument(s) (groupName="all") on Linux and MacOS X platform Nov 8, 2011

Sean Davis Error in biocLite(groupName="all") - unused argument(s) (groupName="all") on Linux and MacOS X platform Nov 8, 2011

Christian Kohler Error in biocLite(groupName="all") - unused argument(s) (groupName="all") on Linux and MacOS X platform Nov 9, 2011

[Bioc-devel] affxparser: Core dump with R 2.14.0 on OSX

3 msgs Nov 8

Dan Tenenbaum affxparser: Core dump with R 2.14.0 on OSX Nov 8, 2011

Kasper Daniel Hansen affxparser: Core dump with R 2.14.0 on OSX Nov 8, 2011

Dan Tenenbaum affxparser: Core dump with R 2.14.0 on OSX Nov 8, 2011

[Bioc-devel] affxparser: Core dump with R 2.14.0 on OSX

2 msgs Nov 7

Henrik Bengtsson affxparser: Core dump with R 2.14.0 on OSX Nov 7, 2011

Kasper Daniel Hansen affxparser: Core dump with R 2.14.0 on OSX Nov 7, 2011

[Bioc-devel] release schedule

2 msgs Nov 7

Antti Honkela release schedule Nov 7, 2011

Martin Morgan release schedule Nov 7, 2011

[Bioc-devel] release schedule

2 msgs Nov 7

Kasper Daniel Hansen release schedule Nov 7, 2011

Neumann, Steffen release schedule Nov 7, 2011

[Bioc-devel] naming of TxDb packages

6 msgs Nov 6

Michael Lawrence naming of TxDb packages Nov 2, 2011

Hervé Pagès naming of TxDb packages Nov 3, 2011

Michael Lawrence naming of TxDb packages Nov 3, 2011

Hervé Pagès naming of TxDb packages Nov 4, 2011

Michael Lawrence naming of TxDb packages Nov 4, 2011

Hervé Pagès naming of TxDb packages Nov 6, 2011

[Bioc-devel] Making GenomicRanges::genome generic more generic ...

5 msgs Nov 6

Steve Lianoglou Making GenomicRanges::genome generic more generic ... Nov 4, 2011

Hervé Pagès Making GenomicRanges::genome generic more generic ... Nov 4, 2011

Michael Lawrence Making GenomicRanges::genome generic more generic ... Nov 4, 2011

Steve Lianoglou Making GenomicRanges::genome generic more generic ... Nov 6, 2011

Hervé Pagès Making GenomicRanges::genome generic more generic ... Nov 6, 2011

[Bioc-devel] Exposing some more IRanges mojo to C.

4 msgs Nov 3

Hervé Pagès Exposing some more IRanges mojo to C. Nov 2, 2011

Hervé Pagès Exposing some more IRanges mojo to C. Nov 3, 2011

Steve Lianoglou Exposing some more IRanges mojo to C. Nov 3, 2011

[Bioc-devel] http://bioconductor.org/checkResults/release/bioc-LATEST/ still points to v2.8

2 msgs Nov 2

Dan Tenenbaum http://bioconductor.org/checkResults/release/bioc-LATEST/ still points to v2.8 Nov 2, 2011

Henrik Bengtsson http://bioconductor.org/checkResults/release/bioc-LATEST/ still points to v2.8 Nov 2, 2011

[Bioc-devel] Minor detail with mirrors

3 msgs Nov 2

Sean Davis Minor detail with mirrors Nov 2, 2011

Hervé Pagès Minor detail with mirrors Nov 2, 2011

Sean Davis Minor detail with mirrors Nov 2, 2011

[Bioc-devel] Preparing package release notes

4 msgs Nov 2

Gordon K Smyth Preparing package release notes Nov 1, 2011

Zhu, Lihua (Julie) Preparing package release notes Nov 2, 2011

Martin Morgan Preparing package release notes Nov 2, 2011

Zhu, Lihua (Julie) Preparing package release notes Nov 2, 2011

[Bioc-devel] http://bioconductor.org/checkResults/release/bioc-LATEST/ still points to v2.8

1 msg Nov 2

Henrik Bengtsson http://bioconductor.org/checkResults/release/bioc-LATEST/ still points to v2.8 Nov 2, 2011

[Bioc-devel] Bioconductor 2.9 is released

1 msg Nov 1

Dan Tenenbaum Bioconductor 2.9 is released Nov 1, 2011

[Bioc-devel] Slicing Throws Interger Overflow

2 msgs Nov 1

Dario Strbenac Slicing Throws Interger Overflow Oct 31, 2011

Valerie Obenchain Slicing Throws Interger Overflow Nov 1, 2011

[Bioc-devel] Modification of seqnames in GRanges

3 msgs Nov 1

Cook, Malcolm Modification of seqnames in GRanges Nov 1, 2011

Hervé Pagès Modification of seqnames in GRanges Nov 1, 2011

Cook, Malcolm Modification of seqnames in GRanges Nov 1, 2011

[Bioc-devel] new package: ReQON

1 msg Nov 1

Cabanski, Chris new package: ReQON Nov 1, 2011

Bioc-devel November 2011