Bioc-devel - November 2011 - Subject View

A call for feedback on writing S4 docs with roxygen

6 msgs · Nov 11 – Nov 11

Steve Lianoglou A call for feedback on writing S4 docs with roxygen Nov 11, 2011 Michael Lawrence A call for feedback on writing S4 docs with roxygen Nov 11, 2011 Vincent Carey A call for feedback on writing S4 docs with roxygen Nov 11, 2011 Steve Lianoglou A call for feedback on writing S4 docs with roxygen Nov 11, 2011 Colin A. Smith A call for feedback on writing S4 docs with roxygen Nov 11, 2011 Michael Lawrence A call for feedback on writing S4 docs with roxygen Nov 11, 2011

BiocInstaller::getUpdatablePackages

2 msgs · Nov 10 – Nov 10

Wolfgang Huber BiocInstaller::getUpdatablePackages Nov 10, 2011 Martin Morgan BiocInstaller::getUpdatablePackages Nov 10, 2011

Bioconductor 2.9 is released

1 msg · Nov 1

Dan Tenenbaum Bioconductor 2.9 is released Nov 1, 2011

Bioconductor Employment: Statistical Research Associate

1 msg · Nov 30

Martin Morgan Bioconductor Employment: Statistical Research Associate Nov 30, 2011

Data Structure - Fixtures

2 msgs · Nov 18 – Nov 18

João Daniel Nunes Duarte Data Structure - Fixtures Nov 18, 2011 Michael Lawrence Data Structure - Fixtures Nov 18, 2011

Error in biocLite(groupName="all") - unused argument(s) (groupName="all") on Linux and MacOS X platform

8 msgs · Nov 8 – Nov 9

Exposing some more IRanges mojo to C.

4 msgs · Nov 2 – Nov 3

Hervé Pagès Exposing some more IRanges mojo to C. Nov 2, 2011 Hervé Pagès Exposing some more IRanges mojo to C. Nov 2, 2011 Hervé Pagès Exposing some more IRanges mojo to C. Nov 3, 2011 Steve Lianoglou Exposing some more IRanges mojo to C. Nov 3, 2011

GSVA/configure.ac problem

6 msgs · Nov 7 – Nov 15

Robert Castelo GSVA/configure.ac problem Nov 7, 2011 Hervé Pagès GSVA/configure.ac problem Nov 9, 2011 Robert Castelo GSVA/configure.ac problem Nov 11, 2011 Dan Tenenbaum GSVA/configure.ac problem Nov 11, 2011 Robert Castelo GSVA/configure.ac problem Nov 14, 2011 Dan Tenenbaum GSVA/configure.ac problem Nov 15, 2011

Installing Geoquery on R version 2.13.1

8 msgs · Nov 28 – Nov 29

Making GenomicRanges::genome generic more generic ...

5 msgs · Nov 4 – Nov 6

Steve Lianoglou Making GenomicRanges::genome generic more generic ... Nov 4, 2011 Hervé Pagès Making GenomicRanges::genome generic more generic ... Nov 4, 2011 Michael Lawrence Making GenomicRanges::genome generic more generic ... Nov 4, 2011 Steve Lianoglou Making GenomicRanges::genome generic more generic ... Nov 6, 2011 Hervé Pagès Making GenomicRanges::genome generic more generic ... Nov 6, 2011

Minor detail with mirrors

3 msgs · Nov 2 – Nov 2

Sean Davis Minor detail with mirrors Nov 2, 2011 Hervé Pagès Minor detail with mirrors Nov 2, 2011 Sean Davis Minor detail with mirrors Nov 2, 2011

Modification of seqnames in GRanges

3 msgs · Nov 1 – Nov 1

Cook, Malcolm Modification of seqnames in GRanges Nov 1, 2011 Hervé Pagès Modification of seqnames in GRanges Nov 1, 2011 Cook, Malcolm Modification of seqnames in GRanges Nov 1, 2011

Preparing package release notes

4 msgs · Nov 1 – Nov 2

Gordon K Smyth Preparing package release notes Nov 1, 2011 Zhu, Lihua (Julie) Preparing package release notes Nov 2, 2011 Martin Morgan Preparing package release notes Nov 2, 2011 Zhu, Lihua (Julie) Preparing package release notes Nov 2, 2011

Slicing Throws Interger Overflow

2 msgs · Oct 31 – Nov 1

Dario Strbenac Slicing Throws Interger Overflow Oct 31, 2011 Valerie Obenchain Slicing Throws Interger Overflow Nov 1, 2011

affxparser: Core dump with R 2.14.0 on OSX

5 msgs · Nov 7 – Nov 8

Henrik Bengtsson affxparser: Core dump with R 2.14.0 on OSX Nov 7, 2011 Kasper Daniel Hansen affxparser: Core dump with R 2.14.0 on OSX Nov 7, 2011 Dan Tenenbaum affxparser: Core dump with R 2.14.0 on OSX Nov 8, 2011 Kasper Daniel Hansen affxparser: Core dump with R 2.14.0 on OSX Nov 8, 2011 Dan Tenenbaum affxparser: Core dump with R 2.14.0 on OSX Nov 8, 2011

affy package and non-square arrays

5 msgs · Nov 4 – Nov 10

Tim Rayner affy package and non-square arrays Nov 4, 2011 James W. MacDonald affy package and non-square arrays Nov 9, 2011 Mike Smith affy package and non-square arrays Nov 10, 2011 Tim Rayner affy package and non-square arrays Nov 10, 2011 James W. MacDonald affy package and non-square arrays Nov 10, 2011

http://bioconductor.org/checkResults/release/bioc-LATEST/ still points to v2.8

3 msgs · Nov 2 – Nov 2

Henrik Bengtsson http://bioconductor.org/checkResults/release/bioc-LATEST/ still points to v2.8 Nov 2, 2011 Dan Tenenbaum http://bioconductor.org/checkResults/release/bioc-LATEST/ still points to v2.8 Nov 2, 2011 Henrik Bengtsson http://bioconductor.org/checkResults/release/bioc-LATEST/ still points to v2.8 Nov 2, 2011

improvement to findOverlap for GRanges

3 msgs · Nov 26 – Nov 26

Kasper Daniel Hansen improvement to findOverlap for GRanges Nov 26, 2011 Michael Lawrence improvement to findOverlap for GRanges Nov 26, 2011 Kasper Daniel Hansen improvement to findOverlap for GRanges Nov 26, 2011

list -> AtomicList coercions

3 msgs · Nov 23 – Nov 29

Michael Lawrence list -> AtomicList coercions Nov 23, 2011 Hervé Pagès list -> AtomicList coercions Nov 29, 2011 Michael Lawrence list -> AtomicList coercions Nov 29, 2011

minfi preprocessIllumina Error

3 msgs · Nov 15 – Nov 15

Dario Strbenac minfi preprocessIllumina Error Nov 15, 2011 Kasper Daniel Hansen minfi preprocessIllumina Error Nov 15, 2011 Dario Strbenac minfi preprocessIllumina Error Nov 15, 2011

naming of TxDb packages

6 msgs · Nov 2 – Nov 6

Michael Lawrence naming of TxDb packages Nov 2, 2011 Hervé Pagès naming of TxDb packages Nov 3, 2011 Michael Lawrence naming of TxDb packages Nov 3, 2011 Hervé Pagès naming of TxDb packages Nov 4, 2011 Michael Lawrence naming of TxDb packages Nov 4, 2011 Hervé Pagès naming of TxDb packages Nov 6, 2011

new package: ReQON

1 msg · Nov 1

Cabanski, Chris new package: ReQON Nov 1, 2011

os x binary

10 msgs · Nov 14 – Nov 20

Kasper Daniel Hansen os x binary Nov 14, 2011 Dan Tenenbaum os x binary Nov 14, 2011 Dan Tenenbaum os x binary Nov 17, 2011 Kasper Daniel Hansen os x binary Nov 17, 2011 Dan Tenenbaum os x binary Nov 17, 2011 Kasper Daniel Hansen os x binary Nov 17, 2011 Dan Tenenbaum os x binary Nov 17, 2011 Kasper Daniel Hansen os x binary Nov 17, 2011 Dan Tenenbaum os x binary Nov 17, 2011 Kasper Daniel Hansen os x binary Nov 20, 2011

package NEWS, README, and INSTALL files available on web site

1 msg · Nov 18

Dan Tenenbaum package NEWS, README, and INSTALL files available on web site Nov 18, 2011

release schedule

4 msgs · Nov 7 – Nov 7

Kasper Daniel Hansen release schedule Nov 7, 2011 Neumann, Steffen release schedule Nov 7, 2011 Antti Honkela release schedule Nov 7, 2011 Martin Morgan release schedule Nov 7, 2011

splitting one GRanges by another

3 msgs · Nov 14 – Nov 14

Vincent Carey splitting one GRanges by another Nov 14, 2011 Steve Lianoglou splitting one GRanges by another Nov 14, 2011 Vincent Carey splitting one GRanges by another Nov 14, 2011

visualizing genomic data

1 msg · Nov 9

Bogdan Tanasa visualizing genomic data Nov 9, 2011

xcms build failure

2 msgs · Nov 19 – Nov 19

Neumann, Steffen xcms build failure Nov 19, 2011 Dan Tenenbaum xcms build failure Nov 19, 2011

Bioc-devel November 2011