Bioc-devel February 2012

[Bioc-devel] Subject: GRanges performance issue, how to avoid looping?

7 msgs Feb 28

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Jesper Gådin Subject: GRanges performance issue, how to avoid looping? Feb 22, 2012

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Kasper Daniel Hansen Subject: GRanges performance issue, how to avoid looping? Feb 22, 2012

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Michael Lawrence Subject: GRanges performance issue, how to avoid looping? Feb 22, 2012

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Hervé Pagès Subject: GRanges performance issue, how to avoid looping? Feb 22, 2012

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Jesper Gådin Subject: GRanges performance issue, how to avoid looping? Feb 27, 2012

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Michael Lawrence Subject: GRanges performance issue, how to avoid looping? Feb 27, 2012

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Jesper Gådin Subject: GRanges performance issue, how to avoid looping? Feb 28, 2012

[Bioc-devel] package cannot be loaded

3 msgs Feb 28

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Mueller, Arne package cannot be loaded Feb 24, 2012

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Martin Morgan package cannot be loaded Feb 24, 2012

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Mueller, Arne package cannot be loaded Feb 28, 2012

[Bioc-devel] idempotent identifier mapping with GSEABase::mapIdentifiers()

4 msgs Feb 27

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Robert Castelo idempotent identifier mapping with GSEABase::mapIdentifiers() Feb 27, 2012

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Vincent Carey idempotent identifier mapping with GSEABase::mapIdentifiers() Feb 27, 2012

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Martin Morgan idempotent identifier mapping with GSEABase::mapIdentifiers() Feb 27, 2012

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Robert Castelo idempotent identifier mapping with GSEABase::mapIdentifiers() Feb 27, 2012

[Bioc-devel] "score" column disappeared when importing bigWigs w/ rtracklayer:::import.bw in R-devel?

2 msgs Feb 24

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Steve Lianoglou "score" column disappeared when importing bigWigs w/ rtracklayer:::import.bw in R-devel? Feb 23, 2012

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Michael Lawrence "score" column disappeared when importing bigWigs w/ rtracklayer:::import.bw in R-devel? Feb 24, 2012

[Bioc-devel] coverage,GenomicRanges interpretation of 'weight'

6 msgs Feb 24

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Cook, Malcolm coverage,GenomicRanges interpretation of 'weight' Feb 23, 2012

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Cook, Malcolm coverage,GenomicRanges interpretation of 'weight' Feb 23, 2012

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Hervé Pagès coverage,GenomicRanges interpretation of 'weight' Feb 23, 2012

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Hervé Pagès coverage,GenomicRanges interpretation of 'weight' Feb 23, 2012

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Nicolas Delhomme coverage,GenomicRanges interpretation of 'weight' Feb 24, 2012

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Hervé Pagès coverage,GenomicRanges interpretation of 'weight' Feb 24, 2012

[Bioc-devel] data compression

1 msg Feb 24

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zacher at lmb.uni-muenchen.de data compression Feb 24, 2012

[Bioc-devel] data compression

3 msgs Feb 24

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zacher at lmb.uni-muenchen.de data compression Feb 24, 2012

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Nicolas Delhomme data compression Feb 24, 2012

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Pedro Madrigal data compression Feb 24, 2012

[Bioc-devel] Bioconductor 2.10 Release Schedule

1 msg Feb 22

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Dan Tenenbaum Bioconductor 2.10 Release Schedule Feb 22, 2012

[Bioc-devel] AAString validity

3 msgs Feb 22

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Laurent Gatto AAString validity Feb 10, 2012

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Hervé Pagès AAString validity Feb 22, 2012

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Laurent Gatto AAString validity Feb 22, 2012

[Bioc-devel] new version with extensive updates: mosaics

1 msg Feb 17

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Dongjun Chung new version with extensive updates: mosaics Feb 17, 2012

[Bioc-devel] svn briefly unavailable 17 Feb 2012

1 msg Feb 16

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Martin Morgan svn briefly unavailable 17 Feb 2012 Feb 16, 2012

[Bioc-devel] Reading all kind of timeseries microarray data

2 msgs Feb 10

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konika chawla Reading all kind of timeseries microarray data Feb 10, 2012

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Sean Davis Reading all kind of timeseries microarray data Feb 10, 2012

[Bioc-devel] package download stats

1 msg Feb 9

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Hervé Pagès package download stats Feb 9, 2012

[Bioc-devel] bioconductor repository server software

2 msgs Feb 9

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Henning Redestig bioconductor repository server software Feb 9, 2012

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Michael Lawrence bioconductor repository server software Feb 9, 2012

[Bioc-devel] import.bed for ENCODE specific format like BED6 + 3(or 12 + 3) scores format in rtracklayer?

5 msgs Feb 8

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Tengfei Yin import.bed for ENCODE specific format like BED6 + 3(or 12 + 3) scores format in rtracklayer? Feb 6, 2012

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Michael Lawrence import.bed for ENCODE specific format like BED6 + 3(or 12 + 3) scores format in rtracklayer? Feb 7, 2012

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Tengfei Yin import.bed for ENCODE specific format like BED6 + 3(or 12 + 3) scores format in rtracklayer? Feb 8, 2012

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Tengfei Yin import.bed for ENCODE specific format like BED6 + 3(or 12 + 3) scores format in rtracklayer? Feb 8, 2012

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Michael Lawrence import.bed for ENCODE specific format like BED6 + 3(or 12 + 3) scores format in rtracklayer? Feb 8, 2012

[Bioc-devel] Package crashes with

7 msgs Feb 3

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Ed Package crashes with Feb 2, 2012

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Laurent Gatto Package crashes with Feb 2, 2012

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Benilton Carvalho Package crashes with Feb 2, 2012

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Laurent Gatto Package crashes with Feb 3, 2012

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Benilton Carvalho Package crashes with Feb 3, 2012

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Dan Tenenbaum Package crashes with Feb 3, 2012

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Dan Tenenbaum Package crashes with Feb 3, 2012

[Bioc-devel] Check warning: Undocumented code objects:, ‘summary’

3 msgs Feb 3

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rcaloger Check warning: Undocumented code objects:, ‘summary’ Feb 3, 2012

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Martin Morgan Check warning: Undocumented code objects:, ‘summary’ Feb 3, 2012

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rcaloger Check warning: Undocumented code objects:, ‘summary’ Feb 3, 2012

[Bioc-devel] gzeof

2 msgs Feb 3

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Dan Tenenbaum gzeof Feb 3, 2012

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Benilton Carvalho gzeof Feb 3, 2012

[Bioc-devel] gzeof

1 msg Feb 3

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Benilton Carvalho gzeof Feb 3, 2012

[Bioc-devel] Package crashes with

1 msg Feb 2

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Dan Tenenbaum Package crashes with Feb 2, 2012