Bioc-devel August 2012

Thread Subject Author Date

89 messages in 30 threads

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[Bioc-devel] Mentored Projects at Bioconductor

2 msgs Aug 31

Stephanie M. Gogarten Mentored Projects at Bioconductor Aug 31, 2012

Tim Triche, Jr. Mentored Projects at Bioconductor Aug 31, 2012

[Bioc-devel] Mentored Projects at Bioconductor

4 msgs Aug 31

Paul Shannon Mentored Projects at Bioconductor Aug 31, 2012

Vincent Carey Mentored Projects at Bioconductor Aug 31, 2012

Nicolas Delhomme Mentored Projects at Bioconductor Aug 31, 2012

Michael Lawrence Mentored Projects at Bioconductor Aug 31, 2012

[Bioc-devel] New package "RMassBank" on Bioconductor

1 msg Aug 31

Schymanski, Emma New package "RMassBank" on Bioconductor Aug 31, 2012

[Bioc-devel] Patch to GFF3 reader in rtracklayer

5 msgs Aug 30

Ryan Patch to GFF3 reader in rtracklayer Aug 27, 2012

Ryan Patch to GFF3 reader in rtracklayer Aug 27, 2012

Ryan Patch to GFF3 reader in rtracklayer Aug 27, 2012

Ryan Patch to GFF3 reader in rtracklayer Aug 30, 2012

Michael Lawrence Patch to GFF3 reader in rtracklayer Aug 30, 2012

[Bioc-devel] annotation() to BiocGenerics?

2 msgs Aug 30

Vincent Carey annotation() to BiocGenerics? Aug 29, 2012

Valerie Obenchain annotation() to BiocGenerics? Aug 30, 2012

[Bioc-devel] SummarizedExperiments

13 msgs Aug 30

Kasper Daniel Hansen SummarizedExperiments Aug 29, 2012

Martin Morgan SummarizedExperiments Aug 29, 2012

Kasper Daniel Hansen SummarizedExperiments Aug 29, 2012

Tim Triche, Jr. SummarizedExperiments Aug 29, 2012

Tim Triche, Jr. SummarizedExperiments Aug 30, 2012

Vincent Carey SummarizedExperiments Aug 30, 2012

Martin Morgan SummarizedExperiments Aug 30, 2012

Sean Davis SummarizedExperiments Aug 30, 2012

Vincent Carey SummarizedExperiments Aug 30, 2012

Sean Davis SummarizedExperiments Aug 30, 2012

Tim Triche, Jr. SummarizedExperiments Aug 30, 2012

Kasper Daniel Hansen SummarizedExperiments Aug 30, 2012

Vincent Carey SummarizedExperiments Aug 30, 2012

[Bioc-devel] rda files and metadata packages

1 msg Aug 28

Dan Tenenbaum rda files and metadata packages Aug 28, 2012

[Bioc-devel] rda files and metadata packages

1 msg Aug 27

Kasper Daniel Hansen rda files and metadata packages Aug 27, 2012

[Bioc-devel] Patch to GFF3 reader in rtracklayer

2 msgs Aug 27

Dan Tenenbaum Patch to GFF3 reader in rtracklayer Aug 27, 2012

Tim Triche, Jr. Patch to GFF3 reader in rtracklayer Aug 27, 2012

[Bioc-devel] graph file

4 msgs Aug 27

Kasper Daniel Hansen graph file Aug 27, 2012

Sean Davis graph file Aug 27, 2012

Vincent Carey graph file Aug 27, 2012

Kasper Daniel Hansen graph file Aug 27, 2012

[Bioc-devel] identifying packages for deprecation

1 msg Aug 24

Dan Tenenbaum identifying packages for deprecation Aug 24, 2012

[Bioc-devel] "patches" for Gviz: utr plotting support and direct BamFile plotting

7 msgs Aug 23

Steve Lianoglou "patches" for Gviz: utr plotting support and direct BamFile plotting Aug 21, 2012

Martin Morgan S4 initialize methods (was Re: "patches" for Gviz: utr plotting support and direct BamFile plotting) Aug 22, 2012

Kasper Daniel Hansen S4 initialize methods (was Re: "patches" for Gviz: utr plotting support and direct BamFile plotting) Aug 22, 2012

Steve Lianoglou S4 initialize methods (was Re: "patches" for Gviz: utr plotting support and direct BamFile plotting) Aug 22, 2012

Kasper Daniel Hansen S4 initialize methods (was Re: "patches" for Gviz: utr plotting support and direct BamFile plotting) Aug 22, 2012

Hahne, Florian S4 initialize methods (was Re: "patches" for Gviz: utr plotting support and direct BamFile plotting) Aug 22, 2012

Hervé Pagès S4 initialize methods (was Re: "patches" for Gviz: utr plotting support and direct BamFile plotting) Aug 23, 2012

[Bioc-devel] Bugfix for Gviz::AlignedReadTrack

1 msg Aug 22

Steve Lianoglou Bugfix for Gviz::AlignedReadTrack Aug 22, 2012

[Bioc-devel] GenomicFeatures namespace warning

4 msgs Aug 20

Hahne, Florian GenomicFeatures namespace warning Aug 20, 2012

Martin Morgan GenomicFeatures namespace warning Aug 20, 2012

Hahne, Florian GenomicFeatures namespace warning Aug 20, 2012

Martin Morgan GenomicFeatures namespace warning Aug 20, 2012

[Bioc-devel] importing a function that uses data()

3 msgs Aug 17

Stephanie M. Gogarten importing a function that uses data() Aug 17, 2012

Martin Morgan importing a function that uses data() Aug 17, 2012

J.Oosting at lumc.nl importing a function that uses data() Aug 17, 2012

[Bioc-devel] runmean and NA values

3 msgs Aug 17

Valerie Obenchain runmean and NA values Aug 6, 2012

Valerie Obenchain runmean and NA values Aug 13, 2012

Hahne, Florian runmean and NA values Aug 17, 2012

[Bioc-devel] Apparent bug in rtracklayer, *-to-BigWigSelection coercion methods(?)

2 msgs Aug 13

Steve Lianoglou Apparent bug in rtracklayer, *-to-BigWigSelection coercion methods(?) Aug 13, 2012

Michael Lawrence Apparent bug in rtracklayer, *-to-BigWigSelection coercion methods(?) Aug 13, 2012

[Bioc-devel] Bioconductor 2.11 release schedule

1 msg Aug 13

Dan Tenenbaum Bioconductor 2.11 release schedule Aug 13, 2012

[Bioc-devel] summarizeOverlaps paired-end error when ignore.strand = TRUE

2 msgs Aug 10

xiaobei.zhou at uzh.ch summarizeOverlaps paired-end error when ignore.strand = TRUE Aug 10, 2012

Valerie Obenchain summarizeOverlaps paired-end error when ignore.strand = TRUE Aug 10, 2012

[Bioc-devel] Change in the coverage function?

2 msgs Aug 9

Nicolas Delhomme Change in the coverage function? Aug 9, 2012

Hervé Pagès Change in the coverage function? Aug 9, 2012

[Bioc-devel] R web interface

3 msgs Aug 9

Sjoerd Vosse R web interface Aug 8, 2012

Robert M. Flight R web interface Aug 9, 2012

Robert M. Flight R web interface Aug 9, 2012

[Bioc-devel] R web interface (Sjoerd Vosse)

1 msg Aug 8

Stefan McKinnon Høj-Edwards R web interface (Sjoerd Vosse) Aug 8, 2012

[Bioc-devel] summarizeOverlaps example error

6 msgs Aug 7

Dan Tenenbaum summarizeOverlaps example error Aug 6, 2012

Mark Robinson summarizeOverlaps example error Aug 6, 2012

Mark Robinson summarizeOverlaps example error Aug 6, 2012

Dan Tenenbaum summarizeOverlaps example error Aug 7, 2012

Valerie Obenchain summarizeOverlaps example error Aug 7, 2012

Mark Robinson summarizeOverlaps example error Aug 7, 2012

[Bioc-devel] R web interface

2 msgs Aug 7

Sjoerd Vosse R web interface Aug 7, 2012

Kieran O'Neill R web interface Aug 7, 2012

[Bioc-devel] summarizeOverlaps example error

1 msg Aug 6

Mark Robinson summarizeOverlaps example error Aug 6, 2012

[Bioc-devel] runmean and NAs

1 msg Aug 6

Valerie Obenchain runmean and NAs Aug 6, 2012

[Bioc-devel] query on chromosome references

2 msgs Aug 6

Vincent Carey query on chromosome references Aug 5, 2012

Tim Triche, Jr. query on chromosome references Aug 6, 2012

[Bioc-devel] problem installing VariantAnnotation devel version

8 msgs Aug 6

Augusto Rendon problem installing VariantAnnotation devel version Aug 5, 2012

Martin Morgan problem installing VariantAnnotation devel version Aug 5, 2012

Vincent Carey problem installing VariantAnnotation devel version Aug 5, 2012

Martin Morgan problem installing VariantAnnotation devel version Aug 5, 2012

Augusto Rendon problem installing VariantAnnotation devel version Aug 5, 2012

Dan Tenenbaum problem installing VariantAnnotation devel version Aug 5, 2012

Martin Morgan problem installing VariantAnnotation devel version Aug 5, 2012

Vincent Carey problem installing VariantAnnotation devel version Aug 6, 2012

[Bioc-devel] Bioc-devel Digest, Vol 101, Issue 1

1 msg Aug 2

Ulrich Bodenhofer Bioc-devel Digest, Vol 101, Issue 1 Aug 2, 2012

[Bioc-devel] YAML for specifying, storing and retrieving (many) parameters

3 msgs Aug 1

Paul Shannon YAML for specifying, storing and retrieving (many) parameters Aug 1, 2012

Steve Lianoglou YAML for specifying, storing and retrieving (many) parameters Aug 1, 2012

Matthew McCall YAML for specifying, storing and retrieving (many) parameters Aug 1, 2012