Bioc-devel August 2012

Friday, August 31, 2012 7 emails

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Tim Triche, Jr. Mentored Projects at Bioconductor

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Stephanie M. Gogarten Mentored Projects at Bioconductor

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Michael Lawrence Mentored Projects at Bioconductor

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Nicolas Delhomme Mentored Projects at Bioconductor

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Vincent Carey Mentored Projects at Bioconductor

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Schymanski, Emma New package "RMassBank" on Bioconductor

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Paul Shannon Mentored Projects at Bioconductor

Thursday, August 30, 2012 12 emails

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Michael Lawrence Patch to GFF3 reader in rtracklayer

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Ryan Patch to GFF3 reader in rtracklayer

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Valerie Obenchain annotation() to BiocGenerics?

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Vincent Carey SummarizedExperiments

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Kasper Daniel Hansen SummarizedExperiments

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Tim Triche, Jr. SummarizedExperiments

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Sean Davis SummarizedExperiments

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Vincent Carey SummarizedExperiments

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Sean Davis SummarizedExperiments

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Martin Morgan SummarizedExperiments

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Vincent Carey SummarizedExperiments

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Tim Triche, Jr. SummarizedExperiments

Wednesday, August 29, 2012 5 emails

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Tim Triche, Jr. SummarizedExperiments

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Kasper Daniel Hansen SummarizedExperiments

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Martin Morgan SummarizedExperiments

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Kasper Daniel Hansen SummarizedExperiments

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Vincent Carey annotation() to BiocGenerics?

Tuesday, August 28, 2012 1 email

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Dan Tenenbaum rda files and metadata packages

Monday, August 27, 2012 10 emails

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Kasper Daniel Hansen rda files and metadata packages

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Tim Triche, Jr. Patch to GFF3 reader in rtracklayer

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Dan Tenenbaum Patch to GFF3 reader in rtracklayer

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Ryan Patch to GFF3 reader in rtracklayer

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Ryan Patch to GFF3 reader in rtracklayer

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Ryan Patch to GFF3 reader in rtracklayer

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Kasper Daniel Hansen graph file

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Vincent Carey graph file

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Sean Davis graph file

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Kasper Daniel Hansen graph file

Friday, August 24, 2012 1 email

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Dan Tenenbaum identifying packages for deprecation

Thursday, August 23, 2012 1 email

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Hervé Pagès S4 initialize methods (was Re: "patches" for Gviz: utr plotting support and direct BamFile plotting)

Wednesday, August 22, 2012 6 emails

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Hahne, Florian S4 initialize methods (was Re: "patches" for Gviz: utr plotting support and direct BamFile plotting)

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Kasper Daniel Hansen S4 initialize methods (was Re: "patches" for Gviz: utr plotting support and direct BamFile plotting)

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Steve Lianoglou S4 initialize methods (was Re: "patches" for Gviz: utr plotting support and direct BamFile plotting)

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Steve Lianoglou Bugfix for Gviz::AlignedReadTrack

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Kasper Daniel Hansen S4 initialize methods (was Re: "patches" for Gviz: utr plotting support and direct BamFile plotting)

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Martin Morgan S4 initialize methods (was Re: "patches" for Gviz: utr plotting support and direct BamFile plotting)

Tuesday, August 21, 2012 1 email

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Steve Lianoglou "patches" for Gviz: utr plotting support and direct BamFile plotting

Monday, August 20, 2012 4 emails

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Martin Morgan GenomicFeatures namespace warning

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Hahne, Florian GenomicFeatures namespace warning

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Martin Morgan GenomicFeatures namespace warning

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Hahne, Florian GenomicFeatures namespace warning

Friday, August 17, 2012 4 emails

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J.Oosting at lumc.nl importing a function that uses data()

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Martin Morgan importing a function that uses data()

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Stephanie M. Gogarten importing a function that uses data()

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Hahne, Florian runmean and NA values

Monday, August 13, 2012 4 emails

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Michael Lawrence Apparent bug in rtracklayer, *-to-BigWigSelection coercion methods(?)

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Steve Lianoglou Apparent bug in rtracklayer, *-to-BigWigSelection coercion methods(?)

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Valerie Obenchain runmean and NA values

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Dan Tenenbaum Bioconductor 2.11 release schedule

Friday, August 10, 2012 2 emails

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Valerie Obenchain summarizeOverlaps paired-end error when ignore.strand = TRUE

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xiaobei.zhou at uzh.ch summarizeOverlaps paired-end error when ignore.strand = TRUE

Thursday, August 9, 2012 4 emails

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Hervé Pagès Change in the coverage function?

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Robert M. Flight R web interface

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Robert M. Flight R web interface

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Nicolas Delhomme Change in the coverage function?

Wednesday, August 8, 2012 2 emails

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Stefan McKinnon Høj-Edwards R web interface (Sjoerd Vosse)

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Sjoerd Vosse R web interface

Tuesday, August 7, 2012 5 emails

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Mark Robinson summarizeOverlaps example error

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Valerie Obenchain summarizeOverlaps example error

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Dan Tenenbaum summarizeOverlaps example error

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Kieran O'Neill R web interface

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Sjoerd Vosse R web interface

Monday, August 6, 2012 8 emails

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Mark Robinson summarizeOverlaps example error

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Mark Robinson summarizeOverlaps example error

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Dan Tenenbaum summarizeOverlaps example error

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Mark Robinson summarizeOverlaps example error

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Valerie Obenchain runmean and NAs

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Tim Triche, Jr. query on chromosome references

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Valerie Obenchain runmean and NA values

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Vincent Carey problem installing VariantAnnotation devel version

Sunday, August 5, 2012 8 emails

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Vincent Carey query on chromosome references

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Martin Morgan problem installing VariantAnnotation devel version

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Dan Tenenbaum problem installing VariantAnnotation devel version

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Augusto Rendon problem installing VariantAnnotation devel version

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Martin Morgan problem installing VariantAnnotation devel version

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Vincent Carey problem installing VariantAnnotation devel version

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Martin Morgan problem installing VariantAnnotation devel version

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Augusto Rendon problem installing VariantAnnotation devel version

Thursday, August 2, 2012 1 email

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Ulrich Bodenhofer Bioc-devel Digest, Vol 101, Issue 1

Wednesday, August 1, 2012 3 emails

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Matthew McCall YAML for specifying, storing and retrieving (many) parameters

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Steve Lianoglou YAML for specifying, storing and retrieving (many) parameters

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Paul Shannon YAML for specifying, storing and retrieving (many) parameters