Bioc-devel December 2012

[Bioc-devel] Add OrgDb class to slot, warning during build

8 msgs Dec 28

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Jesper Gådin Add OrgDb class to slot, warning during build Dec 22, 2012

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Martin Morgan Add OrgDb class to slot, warning during build Dec 22, 2012

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Jesper Gådin Add OrgDb class to slot, warning during build Dec 23, 2012

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Martin Morgan Add OrgDb class to slot, warning during build Dec 23, 2012

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Jesper Gådin Add OrgDb class to slot, warning during build Dec 28, 2012

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Dan Tenenbaum Add OrgDb class to slot, warning during build Dec 28, 2012

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Jesper Gådin Add OrgDb class to slot, warning during build Dec 28, 2012

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Dan Tenenbaum Add OrgDb class to slot, warning during build Dec 28, 2012

[Bioc-devel] subsetByOverlaps export missing from NAMESPACE in GenomicRanges

4 msgs Dec 23

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Jesper Gådin subsetByOverlaps export missing from NAMESPACE in GenomicRanges Dec 23, 2012

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Tim Triche, Jr. subsetByOverlaps export missing from NAMESPACE in GenomicRanges Dec 23, 2012

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Jesper Gådin subsetByOverlaps export missing from NAMESPACE in GenomicRanges Dec 23, 2012

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Martin Morgan subsetByOverlaps export missing from NAMESPACE in GenomicRanges Dec 23, 2012

[Bioc-devel] Rsamtools segfault

2 msgs Dec 21

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Michael Lawrence Rsamtools segfault Dec 21, 2012

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Martin Morgan Rsamtools segfault Dec 21, 2012

[Bioc-devel] map between NCBI GEO GPLs and BioC chip annotation packages

1 msg Dec 21

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Andreas Heider map between NCBI GEO GPLs and BioC chip annotation packages Dec 21, 2012

[Bioc-devel] tilde paths in rtracklayer import and export functions

2 msgs Dec 20

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Hahne, Florian tilde paths in rtracklayer import and export functions Dec 20, 2012

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Michael Lawrence tilde paths in rtracklayer import and export functions Dec 20, 2012

[Bioc-devel] R v3.0.0: It's now official and BioC devel needs some updates

2 msgs Dec 16

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Dan Tenenbaum R v3.0.0: It's now official and BioC devel needs some updates Dec 16, 2012

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Henrik Bengtsson R v3.0.0: It's now official and BioC devel needs some updates Dec 16, 2012

[Bioc-devel] R v3.0.0: It's now official and BioC devel needs some updates

1 msg Dec 16

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Henrik Bengtsson R v3.0.0: It's now official and BioC devel needs some updates Dec 16, 2012

[Bioc-devel] Getting pointers to data inside XStringSet object

2 msgs Dec 14

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Ulrich Bodenhofer Getting pointers to data inside XStringSet object Dec 14, 2012

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Hervé Pagès Getting pointers to data inside XStringSet object Dec 14, 2012

[Bioc-devel] Making hypothesis testing easier with design matrices?

5 msgs Dec 11

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Ryan Making hypothesis testing easier with design matrices? Dec 10, 2012

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Gordon K Smyth Making hypothesis testing easier with design matrices? Dec 10, 2012

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Ryan Making hypothesis testing easier with design matrices? Dec 10, 2012

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Gordon K Smyth Making hypothesis testing easier with design matrices? Dec 10, 2012

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Ryan Making hypothesis testing easier with design matrices? Dec 11, 2012

[Bioc-devel] Does it matter whether I pool technical replicates for edgeR

2 msgs Dec 6

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Ryan Does it matter whether I pool technical replicates for edgeR Dec 6, 2012

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Kasper Daniel Hansen Does it matter whether I pool technical replicates for edgeR Dec 6, 2012

[Bioc-devel] Subversion server scheduled downtime Sunday 12/9

1 msg Dec 6

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Dan Tenenbaum Subversion server scheduled downtime Sunday 12/9 Dec 6, 2012

[Bioc-devel] Developing flowFit: an open-source alternative to ModFit LT.

1 msg Dec 5

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Davide Rambaldi Developing flowFit: an open-source alternative to ModFit LT. Dec 5, 2012

[Bioc-devel] Reading FASTQ/BAM from open file handle?

4 msgs Dec 4

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Ryan Reading FASTQ/BAM from open file handle? Dec 4, 2012

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Martin Morgan Reading FASTQ/BAM from open file handle? Dec 4, 2012

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Ryan Reading FASTQ/BAM from open file handle? Dec 4, 2012

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Martin Morgan Reading FASTQ/BAM from open file handle? Dec 4, 2012

[Bioc-devel] BiocParallel -- update

6 msgs Dec 4

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Martin Morgan BiocParallel -- update Dec 3, 2012

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Michael Lawrence BiocParallel -- update Dec 4, 2012

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Ryan BiocParallel -- update Dec 4, 2012

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Ryan BiocParallel -- update Dec 4, 2012

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Michael Lawrence BiocParallel -- update Dec 4, 2012

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Ryan BiocParallel -- update Dec 4, 2012

[Bioc-devel] BiocParallel

4 msgs Dec 4

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Henrik Bengtsson BiocParallel Dec 3, 2012

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Hahne, Florian BiocParallel Dec 4, 2012

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Vincent Carey BiocParallel Dec 4, 2012

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Henrik Bengtsson BiocParallel Dec 4, 2012

[Bioc-devel] biomaR + CosmicMart fails in devel

1 msg Dec 3

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Paul Shannon biomaR + CosmicMart fails in devel Dec 3, 2012

[Bioc-devel] bigBed support in rtracklayer

4 msgs Dec 3

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Tim Triche, Jr. bigBed support in rtracklayer Dec 2, 2012

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Tim Triche, Jr. bigBed support in rtracklayer Dec 2, 2012

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Michael Lawrence bigBed support in rtracklayer Dec 3, 2012

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Tim Triche, Jr. bigBed support in rtracklayer Dec 3, 2012

[Bioc-devel] plots and triangle view

2 msgs Dec 3

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Servant Nicolas plots and triangle view Dec 3, 2012

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Kasper Daniel Hansen plots and triangle view Dec 3, 2012