Bioc-devel December 2012

Thread Subject Author Date

52 messages in 17 threads

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Add OrgDb class to slot, warning during build

8 msgs · Dec 22 – Dec 28

Jesper Gådin Add OrgDb class to slot, warning during build Dec 22, 2012 Martin Morgan Add OrgDb class to slot, warning during build Dec 22, 2012 Jesper Gådin Add OrgDb class to slot, warning during build Dec 23, 2012 Martin Morgan Add OrgDb class to slot, warning during build Dec 23, 2012 Jesper Gådin Add OrgDb class to slot, warning during build Dec 28, 2012 Dan Tenenbaum Add OrgDb class to slot, warning during build Dec 28, 2012 Jesper Gådin Add OrgDb class to slot, warning during build Dec 28, 2012 Dan Tenenbaum Add OrgDb class to slot, warning during build Dec 28, 2012

BiocParallel

4 msgs · Dec 3 – Dec 4

Henrik Bengtsson BiocParallel Dec 3, 2012 Hahne, Florian BiocParallel Dec 4, 2012 Vincent Carey BiocParallel Dec 4, 2012 Henrik Bengtsson BiocParallel Dec 4, 2012

BiocParallel -- update

6 msgs · Dec 3 – Dec 4

Martin Morgan BiocParallel -- update Dec 3, 2012 Michael Lawrence BiocParallel -- update Dec 4, 2012 Ryan BiocParallel -- update Dec 4, 2012 Ryan BiocParallel -- update Dec 4, 2012 Michael Lawrence BiocParallel -- update Dec 4, 2012 Ryan BiocParallel -- update Dec 4, 2012

Developing flowFit: an open-source alternative to ModFit LT.

1 msg · Dec 5

Davide Rambaldi Developing flowFit: an open-source alternative to ModFit LT. Dec 5, 2012

Does it matter whether I pool technical replicates for edgeR

2 msgs · Dec 6 – Dec 6

Ryan Does it matter whether I pool technical replicates for edgeR Dec 6, 2012 Kasper Daniel Hansen Does it matter whether I pool technical replicates for edgeR Dec 6, 2012

Getting pointers to data inside XStringSet object

2 msgs · Dec 14 – Dec 14

Ulrich Bodenhofer Getting pointers to data inside XStringSet object Dec 14, 2012 Hervé Pagès Getting pointers to data inside XStringSet object Dec 14, 2012

Making hypothesis testing easier with design matrices?

5 msgs · Dec 10 – Dec 11

Ryan Making hypothesis testing easier with design matrices? Dec 10, 2012 Gordon K Smyth Making hypothesis testing easier with design matrices? Dec 10, 2012 Ryan Making hypothesis testing easier with design matrices? Dec 10, 2012 Gordon K Smyth Making hypothesis testing easier with design matrices? Dec 10, 2012 Ryan Making hypothesis testing easier with design matrices? Dec 11, 2012

R v3.0.0: It's now official and BioC devel needs some updates

3 msgs · Dec 16 – Dec 16

Henrik Bengtsson R v3.0.0: It's now official and BioC devel needs some updates Dec 16, 2012 Dan Tenenbaum R v3.0.0: It's now official and BioC devel needs some updates Dec 16, 2012 Henrik Bengtsson R v3.0.0: It's now official and BioC devel needs some updates Dec 16, 2012

Reading FASTQ/BAM from open file handle?

4 msgs · Dec 4 – Dec 4

Ryan Reading FASTQ/BAM from open file handle? Dec 4, 2012 Martin Morgan Reading FASTQ/BAM from open file handle? Dec 4, 2012 Ryan Reading FASTQ/BAM from open file handle? Dec 4, 2012 Martin Morgan Reading FASTQ/BAM from open file handle? Dec 4, 2012

Rsamtools segfault

2 msgs · Dec 21 – Dec 21

Michael Lawrence Rsamtools segfault Dec 21, 2012 Martin Morgan Rsamtools segfault Dec 21, 2012

Subversion server scheduled downtime Sunday 12/9

1 msg · Dec 6

Dan Tenenbaum Subversion server scheduled downtime Sunday 12/9 Dec 6, 2012

bigBed support in rtracklayer

4 msgs · Dec 2 – Dec 3

Tim Triche, Jr. bigBed support in rtracklayer Dec 2, 2012 Tim Triche, Jr. bigBed support in rtracklayer Dec 2, 2012 Michael Lawrence bigBed support in rtracklayer Dec 3, 2012 Tim Triche, Jr. bigBed support in rtracklayer Dec 3, 2012

biomaR + CosmicMart fails in devel

1 msg · Dec 3

Paul Shannon biomaR + CosmicMart fails in devel Dec 3, 2012

map between NCBI GEO GPLs and BioC chip annotation packages

1 msg · Dec 21

Andreas Heider map between NCBI GEO GPLs and BioC chip annotation packages Dec 21, 2012

plots and triangle view

2 msgs · Dec 3 – Dec 3

Servant Nicolas plots and triangle view Dec 3, 2012 Kasper Daniel Hansen plots and triangle view Dec 3, 2012

subsetByOverlaps export missing from NAMESPACE in GenomicRanges

4 msgs · Dec 23 – Dec 23

Jesper Gådin subsetByOverlaps export missing from NAMESPACE in GenomicRanges Dec 23, 2012 Tim Triche, Jr. subsetByOverlaps export missing from NAMESPACE in GenomicRanges Dec 23, 2012 Jesper Gådin subsetByOverlaps export missing from NAMESPACE in GenomicRanges Dec 23, 2012 Martin Morgan subsetByOverlaps export missing from NAMESPACE in GenomicRanges Dec 23, 2012

tilde paths in rtracklayer import and export functions

2 msgs · Dec 20 – Dec 20

Hahne, Florian tilde paths in rtracklayer import and export functions Dec 20, 2012 Michael Lawrence tilde paths in rtracklayer import and export functions Dec 20, 2012