Bioc-devel - May 2013 - Subject View

-which() pitfall in subsetting exressions

1 msg · May 26

Wolfgang Huber -which() pitfall in subsetting exressions May 26, 2013

Bioc 2013 Conference in Seattle, July 18-19 -- Updates

1 msg · May 30

Martin Morgan Bioc 2013 Conference in Seattle, July 18-19 -- Updates May 30, 2013

Bioconductor Package Builder and _R_CHECK_FORCE_SUGGESTS_

6 msgs · May 16 – May 17

Renaud Gaujoux Bioconductor Package Builder and _R_CHECK_FORCE_SUGGESTS_ May 16, 2013 Dan Tenenbaum Bioconductor Package Builder and _R_CHECK_FORCE_SUGGESTS_ May 17, 2013 Steve Lianoglou Bioconductor Package Builder and _R_CHECK_FORCE_SUGGESTS_ May 17, 2013 Dan Tenenbaum Bioconductor Package Builder and _R_CHECK_FORCE_SUGGESTS_ May 17, 2013 Dan Tenenbaum Bioconductor Package Builder and _R_CHECK_FORCE_SUGGESTS_ May 17, 2013 Renaud Gaujoux Bioconductor Package Builder and _R_CHECK_FORCE_SUGGESTS_ May 17, 2013

Boost packaged on rforge

7 msgs · May 1 – May 3

Neumann, Steffen Boost packaged on rforge May 1, 2013 Vincent Carey Boost packaged on rforge May 1, 2013 Steve Lianoglou Boost packaged on rforge May 1, 2013 Neumann, Steffen Boost packaged on rforge May 1, 2013 Vincent Carey Boost packaged on rforge May 2, 2013 Vincent Carey Boost packaged on rforge May 2, 2013 Peter Glaus Boost packaged on rforge May 3, 2013

BuxcoR package is now available

1 msg · May 31

Daniel Bottomly BuxcoR package is now available May 31, 2013

Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 28-29 May, Seattle

1 msg · May 1

Martin Morgan Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 28-29 May, Seattle May 1, 2013

ExpressionSet and LumiBatch: inheritance problem in S4 methods for union class

3 msgs · May 7 – May 7

Renaud Gaujoux ExpressionSet and LumiBatch: inheritance problem in S4 methods for union class May 7, 2013 Martin Morgan ExpressionSet and LumiBatch: inheritance problem in S4 methods for union class May 7, 2013 Renaud Gaujoux ExpressionSet and LumiBatch: inheritance problem in S4 methods for union class May 7, 2013

Extracting mzR compatible acquisition number from mzIdentML files

3 msgs · May 1 – May 1

Thomas Lin Pedersen Extracting mzR compatible acquisition number from mzIdentML files May 1, 2013 Neumann, Steffen Extracting mzR compatible acquisition number from mzIdentML files May 1, 2013 Laurent Gatto Extracting mzR compatible acquisition number from mzIdentML files May 1, 2013

GenomicRanges broken in the devel branch

2 msgs · May 13 – May 13

Hahne, Florian GenomicRanges broken in the devel branch May 13, 2013 Hervé Pagès GenomicRanges broken in the devel branch May 13, 2013

IntervalTree and Genomic Ranges

12 msgs · May 22 – May 30

Job Opportunity: Senior Bioinformatics Analyst at the University of Cambridge (Cancer Research UK)

1 msg · May 15

Rory Stark Job Opportunity: Senior Bioinformatics Analyst at the University of Cambridge (Cancer Research UK) May 15, 2013

OpenMP error when using ShortRead::FastqStreamer with parallel::parLapply

3 msgs · May 26 – May 28

Michael Stadler OpenMP error when using ShortRead::FastqStreamer with parallel::parLapply May 26, 2013 Martin Morgan OpenMP error when using ShortRead::FastqStreamer with parallel::parLapply May 27, 2013 Michael Stadler OpenMP error when using ShortRead::FastqStreamer with parallel::parLapply May 28, 2013

R version in Bioc packages (was Re: [BioC] Package \'jmosaics\' not found)

5 msgs · May 21 – May 21

Martin Morgan R version in Bioc packages (was Re: [BioC] Package \'jmosaics\' not found) May 21, 2013 James W. MacDonald R version in Bioc packages (was Re: [BioC] Package \'jmosaics\' not found) May 21, 2013 Neumann, Steffen R version in Bioc packages (was Re: [BioC] Package \'jmosaics\' not found) May 21, 2013 Dan Tenenbaum R version in Bioc packages (was Re: [BioC] Package \'jmosaics\' not found) May 21, 2013 Dan Tenenbaum R version in Bioc packages (was Re: [BioC] Package \'jmosaics\' not found) May 21, 2013

Timeout during package installation

4 msgs · May 27 – May 29

Marcus Moeller Timeout during package installation May 27, 2013 Dan Tenenbaum Timeout during package installation May 28, 2013 Dan Tenenbaum Timeout during package installation May 28, 2013 Dan Tenenbaum Timeout during package installation May 29, 2013

UniProt.ws: Error in .mergeList when mapping to UNIPROTKB

1 msg · May 24

Thomas Lin Pedersen UniProt.ws: Error in .mergeList when mapping to UNIPROTKB May 24, 2013

\VignetteIndexEntry

3 msgs · May 20 – May 21

Wolfgang Huber \VignetteIndexEntry May 20, 2013 Martin Morgan \VignetteIndexEntry May 20, 2013 Dan Tenenbaum \VignetteIndexEntry May 21, 2013

deprecation of keepSeqlevels and renameSeqlevels

19 msgs · May 18 – May 29

maPlot Fold Change

2 msgs · May 21 – May 22

Dario Strbenac maPlot Fold Change May 21, 2013 Kasper Daniel Hansen maPlot Fold Change May 22, 2013

rsbml installation fails on MacOS with libsbml 3

1 msg · May 29

Dan Tenenbaum rsbml installation fails on MacOS with libsbml 3 May 29, 2013

Bioc-devel May 2013