Skip to content

Bioc-devel July 2013

|
[Bioc-devel] Running Time of readBamGappedAlignmentPairs
1 msg
Hervé Pagès Running Time of readBamGappedAlignmentPairs Jul 31, 2013
[Bioc-devel] the character to collapse the geneNames when using the disjointExons function with aggregateGenes=TRUE
5 msgs
Nicolas Delhomme the character to collapse the geneNames when using the disjointExons function with aggregateGenes=TRUE Jul 31, 2013
Valerie Obenchain the character to collapse the geneNames when using the disjointExons function with aggregateGenes=TRUE Jul 31, 2013
Michael Love the character to collapse the geneNames when using the disjointExons function with aggregateGenes=TRUE Jul 31, 2013
Valerie Obenchain the character to collapse the geneNames when using the disjointExons function with aggregateGenes=TRUE Jul 31, 2013
Alejandro Reyes the character to collapse the geneNames when using the disjointExons function with aggregateGenes=TRUE Jul 31, 2013
[Bioc-devel] shiny, Bioconductor, and reproducible research
5 msgs
Dan Tenenbaum shiny, Bioconductor, and reproducible research Jul 29, 2013
Diego Diez shiny, Bioconductor, and reproducible research Jul 30, 2013
Winston Chang shiny, Bioconductor, and reproducible research Jul 31, 2013
Kasper Daniel Hansen shiny, Bioconductor, and reproducible research Jul 31, 2013
Tim Triche, Jr. shiny, Bioconductor, and reproducible research Jul 31, 2013
[Bioc-devel] programmaticallly get unused disk space
1 msg
Michael Stadler programmaticallly get unused disk space Jul 30, 2013
[Bioc-devel] shiny, Bioconductor, and reproducible research
6 msgs
Levi Waldron shiny, Bioconductor, and reproducible research Jul 27, 2013
Kasper Daniel Hansen shiny, Bioconductor, and reproducible research Jul 29, 2013
Dan Tenenbaum shiny, Bioconductor, and reproducible research Jul 29, 2013
Tim Triche, Jr. shiny, Bioconductor, and reproducible research Jul 29, 2013
Steve Lianoglou shiny, Bioconductor, and reproducible research Jul 29, 2013
Tim Triche, Jr. shiny, Bioconductor, and reproducible research Jul 29, 2013
[Bioc-devel] Running Time of readBamGappedAlignmentPairs
4 msgs
Dario Strbenac Running Time of readBamGappedAlignmentPairs Jul 28, 2013
Hervé Pagès Running Time of readBamGappedAlignmentPairs Jul 28, 2013
Dario Strbenac Running Time of readBamGappedAlignmentPairs Jul 29, 2013
Hervé Pagès Running Time of readBamGappedAlignmentPairs Jul 29, 2013
[Bioc-devel] Error in findOverlaps
6 msgs
Ou, Jianhong Error in findOverlaps Jul 23, 2013
Hervé Pagès Error in findOverlaps Jul 23, 2013
Ou, Jianhong Error in findOverlaps Jul 24, 2013
Hervé Pagès Error in findOverlaps Jul 25, 2013
Hervé Pagès Error in findOverlaps Jul 25, 2013
Ou, Jianhong Error in findOverlaps Jul 29, 2013
[Bioc-devel] Return Type of as.table on Hits Object
2 msgs
Dario Strbenac Return Type of as.table on Hits Object Jul 25, 2013
Michael Stadler programmaticallly get unused disk space Jul 29, 2013
[Bioc-devel] shiny, Bioconductor, and reproducible research
2 msgs
Dan Tenenbaum shiny, Bioconductor, and reproducible research Jul 26, 2013
Michael Lawrence shiny, Bioconductor, and reproducible research Jul 26, 2013
[Bioc-devel] texi2dvi error on package build
1 msg
Dan Tenenbaum texi2dvi error on package build Jul 25, 2013
[Bioc-devel] texi2dvi error on package build
1 msg
Steve Piccolo texi2dvi error on package build Jul 25, 2013
[Bioc-devel] my old MergedDataSet implementation
2 msgs
Tim Triche, Jr. my old MergedDataSet implementation Jul 24, 2013
Vincent Carey my old MergedDataSet implementation Jul 25, 2013
[Bioc-devel] Experimental data package release and devel version
1 msg
Dan Tenenbaum Experimental data package release and devel version Jul 23, 2013
[Bioc-devel] heavy vignette
3 msgs
Hernandez Ferrer, Carles heavy vignette Jul 23, 2013
Cristobal Fresno Rodríguez heavy vignette Jul 23, 2013
Marc Carlson heavy vignette Jul 23, 2013
[Bioc-devel] A case for specific markup (was BiocStyle for styling ...)
2 msgs
Gabriel Becker A case for specific markup (was BiocStyle for styling ...) Jul 23, 2013
Kasper Daniel Hansen A case for specific markup (was BiocStyle for styling ...) Jul 23, 2013
[Bioc-devel] IntAE buffers needs to be freed or not??
5 msgs
Ge Tan IntAE buffers needs to be freed or not?? Jul 19, 2013
Hervé Pagès IntAE buffers needs to be freed or not?? Jul 19, 2013
Ge Tan IntAE buffers needs to be freed or not?? Jul 22, 2013
Hervé Pagès IntAE buffers needs to be freed or not?? Jul 22, 2013
Ge Tan IntAE buffers needs to be freed or not?? Jul 23, 2013
[Bioc-devel] Available Columns for GenomicFeatures select
1 msg
Dario Strbenac Available Columns for GenomicFeatures select Jul 22, 2013
[Bioc-devel] BiocStyle for styling Sweave (and other?) vignettes
8 msgs
Martin Morgan BiocStyle for styling Sweave (and other?) vignettes Jul 14, 2013
Robert Castelo BiocStyle for styling Sweave (and other?) vignettes Jul 16, 2013
Ou, Jianhong BiocStyle for styling Sweave (and other?) vignettes Jul 16, 2013
Martin Morgan BiocStyle for styling Sweave (and other?) vignettes Jul 16, 2013
Martin Morgan BiocStyle for styling Sweave (and other?) vignettes Jul 16, 2013
Robert Castelo BiocStyle for styling Sweave (and other?) vignettes Jul 16, 2013
Kasper Daniel Hansen BiocStyle for styling Sweave (and other?) vignettes Jul 16, 2013
Martin Morgan BiocStyle for styling Sweave (and other?) vignettes Jul 22, 2013
[Bioc-devel] BiocStyle for styling Sweave (and other?) vignettes
1 msg
Martin Morgan BiocStyle for styling Sweave (and other?) vignettes Jul 22, 2013
[Bioc-devel] BiocStyle and knitr: option clash for package color
2 msgs
Sebastian Gibb BiocStyle and knitr: option clash for package color Jul 22, 2013
Martin Morgan BiocStyle and knitr: option clash for package color Jul 22, 2013
[Bioc-devel] parLapplyLB: Load balancing?
1 msg
Ulrich Bodenhofer parLapplyLB: Load balancing? Jul 19, 2013
[Bioc-devel] exonsBy, OrganismDb should add metadata columns at the top level
1 msg
Michael Lawrence exonsBy, OrganismDb should add metadata columns at the top level Jul 18, 2013
[Bioc-devel] rtracklayer Export BED itemRgb Annotation
2 msgs
Dario Strbenac rtracklayer Export BED itemRgb Annotation Jul 18, 2013
Michael Lawrence rtracklayer Export BED itemRgb Annotation Jul 18, 2013
[Bioc-devel] VcfFile and VcfFileList
5 msgs
Robert Castelo VcfFile and VcfFileList Jul 17, 2013
Valerie Obenchain VcfFile and VcfFileList Jul 17, 2013
Robert Castelo VcfFile and VcfFileList Jul 17, 2013
Robert Castelo VcfFile and VcfFileList Jul 17, 2013
Michael Lawrence VcfFile and VcfFileList Jul 18, 2013
[Bioc-devel] new package: paircompviz
1 msg
Michal Burda new package: paircompviz Jul 17, 2013
[Bioc-devel] Experimental data package release and devel version
1 msg
Bernd Fischer Experimental data package release and devel version Jul 17, 2013
[Bioc-devel] renameModelMatrixColumns mishap + patch for DESeq2
8 msgs
Steve Lianoglou renameModelMatrixColumns mishap + patch for DESeq2 Jul 9, 2013
Kasper Daniel Hansen renameModelMatrixColumns mishap + patch for DESeq2 Jul 9, 2013
Steve Lianoglou renameModelMatrixColumns mishap + patch for DESeq2 Jul 9, 2013
Kasper Daniel Hansen renameModelMatrixColumns mishap + patch for DESeq2 Jul 9, 2013
Michael Love renameModelMatrixColumns mishap + patch for DESeq2 Jul 9, 2013
Steve Lianoglou renameModelMatrixColumns mishap + patch for DESeq2 Jul 11, 2013
Michael Love renameModelMatrixColumns mishap + patch for DESeq2 Jul 15, 2013
Steve Lianoglou renameModelMatrixColumns mishap + patch for DESeq2 Jul 15, 2013
[Bioc-devel] rtracklayer import Error
2 msgs
Dario Strbenac rtracklayer import Error Jul 14, 2013
Michael Lawrence rtracklayer import Error Jul 15, 2013
[Bioc-devel] Parsing Error for UCSC Table
1 msg
Dario Strbenac Parsing Error for UCSC Table Jul 15, 2013
[Bioc-devel] best practice: verbose messages
11 msgs
Kasper Daniel Hansen best practice: verbose messages Jul 10, 2013
Michael Lawrence best practice: verbose messages Jul 10, 2013
Dan Tenenbaum best practice: verbose messages Jul 10, 2013
Kasper Daniel Hansen best practice: verbose messages Jul 10, 2013
Dan Tenenbaum best practice: verbose messages Jul 10, 2013
Martin Morgan best practice: verbose messages Jul 10, 2013
Hervé Pagès best practice: verbose messages Jul 10, 2013
Henrik Bengtsson best practice: verbose messages Jul 11, 2013
Kasper Daniel Hansen best practice: verbose messages Jul 11, 2013
Sean Davis best practice: verbose messages Jul 11, 2013
Martin Morgan best practice: verbose messages Jul 14, 2013
[Bioc-devel] appending 2 GappedAlignments using "c" takes long
7 msgs
Nicolas Delhomme appending 2 GappedAlignments using "c" takes long Jul 9, 2013
Martin Morgan appending 2 GappedAlignments using "c" takes long Jul 10, 2013
Hervé Pagès appending 2 GappedAlignments using "c" takes long Jul 10, 2013
Nicolas Delhomme appending 2 GappedAlignments using "c" takes long Jul 11, 2013
Nicolas Delhomme appending 2 GappedAlignments using "c" takes long Jul 11, 2013
Nicolas Delhomme appending 2 GappedAlignments using "c" takes long Jul 11, 2013
Hervé Pagès appending 2 GappedAlignments using "c" takes long Jul 12, 2013
[Bioc-devel] question about data size of package
1 msg
Dan Tenenbaum question about data size of package Jul 12, 2013
[Bioc-devel] question about data size of package
1 msg
Ashley Liu question about data size of package Jul 12, 2013
[Bioc-devel] exp. data, updates
3 msgs
Kasper Daniel Hansen exp. data, updates Jul 10, 2013
Stephanie M. Gogarten exp. data, updates Jul 10, 2013
Hervé Pagès exp. data, updates Jul 10, 2013
[Bioc-devel] exp. data, updates
5 msgs
Dan Tenenbaum exp. data, updates Jul 10, 2013
Kasper Daniel Hansen exp. data, updates Jul 10, 2013
Dan Tenenbaum exp. data, updates Jul 10, 2013
Hervé Pagès exp. data, updates Jul 10, 2013
Kasper Daniel Hansen exp. data, updates Jul 10, 2013
[Bioc-devel] GenomicRanges::assays
7 msgs
Kasper Daniel Hansen GenomicRanges::assays Jul 9, 2013
Kasper Daniel Hansen GenomicRanges::assays Jul 9, 2013
Martin Morgan GenomicRanges::assays Jul 9, 2013
Tim Triche, Jr. GenomicRanges::assays Jul 9, 2013
Kasper Daniel Hansen GenomicRanges::assays Jul 9, 2013
Kasper Daniel Hansen GenomicRanges::assays Jul 9, 2013
Tim Triche, Jr. GenomicRanges::assays Jul 9, 2013
[Bioc-devel] finding specific (outdated!) bioc package archives?
5 msgs
Ross Lazarus finding specific (outdated!) bioc package archives? Jul 8, 2013
Martin Morgan finding specific (outdated!) bioc package archives? Jul 8, 2013
Dan Tenenbaum finding specific (outdated!) bioc package archives? Jul 8, 2013
Ross Lazarus finding specific (outdated!) bioc package archives? Jul 8, 2013
Gabriel Becker finding specific (outdated!) bioc package archives? Jul 9, 2013
[Bioc-devel] BioC2013: only 9 more slots left!
1 msg
Dan Tenenbaum BioC2013: only 9 more slots left! Jul 9, 2013
[Bioc-devel] BioC2013 Afternoon Lab schedule now online
1 msg
Dan Tenenbaum BioC2013 Afternoon Lab schedule now online Jul 8, 2013
[Bioc-devel] IntervalTree and Genomic Ranges
3 msgs
Kasper Daniel Hansen IntervalTree and Genomic Ranges Jul 6, 2013
Michael Lawrence IntervalTree and Genomic Ranges Jul 7, 2013
Hector Corrada Bravo IntervalTree and Genomic Ranges Jul 7, 2013
[Bioc-devel] svn and package version numbers
7 msgs
Kasper Daniel Hansen svn and package version numbers Jul 4, 2013
Dan Tenenbaum svn and package version numbers Jul 5, 2013
Kasper Daniel Hansen svn and package version numbers Jul 5, 2013
Dan Tenenbaum svn and package version numbers Jul 5, 2013
Kasper Daniel Hansen svn and package version numbers Jul 5, 2013
Dan Tenenbaum svn and package version numbers Jul 5, 2013
Kasper Daniel Hansen svn and package version numbers Jul 5, 2013
[Bioc-devel] user request re. build reports
4 msgs
Kasper Daniel Hansen user request re. build reports Jul 3, 2013
Hervé Pagès user request re. build reports Jul 4, 2013
Hervé Pagès user request re. build reports Jul 4, 2013
Kasper Daniel Hansen user request re. build reports Jul 4, 2013
[Bioc-devel] BiocParallel: BatchJobs backend (Was: Re: BiocParallel)
1 msg
Hahne, Florian BiocParallel: BatchJobs backend (Was: Re: BiocParallel) Jul 3, 2013
[Bioc-devel] Reminder: new features in devel only
1 msg
Martin Morgan Reminder: new features in devel only Jul 2, 2013
[Bioc-devel] BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1
1 msg