Bioc-devel August 2013

"R CMD check" and par(mfrow=…) in vignettes

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3 msgs · Aug 6 – Aug 7

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Wolfgang Huber "R CMD check" and par(mfrow=…) in vignettes Aug 6, 2013

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Martin Morgan "R CMD check" and par(mfrow=…) in vignettes Aug 7, 2013

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Martin Maechler "R CMD check" and par(mfrow=…) in vignettes Aug 7, 2013

*Ranges paper published

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2 msgs · Aug 8 – Aug 9

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Michael Lawrence *Ranges paper published Aug 8, 2013

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Tim Triche, Jr. *Ranges paper published Aug 9, 2013

Bioconductor 2.13 release schedule

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1 msg · Aug 20

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Dan Tenenbaum Bioconductor 2.13 release schedule Aug 20, 2013

Bioconductor Job Opportunities

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1 msg · Aug 20

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Martin Morgan Bioconductor Job Opportunities Aug 20, 2013

Course: Understanding R / Bioconductor, Sept 30-Oct 1, Seattle

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1 msg · Aug 25

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Martin Morgan Course: Understanding R / Bioconductor, Sept 30-Oct 1, Seattle Aug 25, 2013

Error installing GenomicRanges

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3 msgs · Aug 23 – Aug 25

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James Diggans Error installing GenomicRanges Aug 23, 2013

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Martin Morgan Error installing GenomicRanges Aug 23, 2013

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James Diggans Error installing GenomicRanges Aug 25, 2013

FYI--"Input on Development and Analysis Methods and Software for Big Data"

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1 msg · Aug 9

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Sean Davis FYI--"Input on Development and Analysis Methods and Software for Big Data" Aug 9, 2013

GenomicFeatures LoadDb Path

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2 msgs · Aug 8 – Aug 9

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Dario Strbenac GenomicFeatures LoadDb Path Aug 8, 2013

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Marc Carlson GenomicFeatures LoadDb Path Aug 9, 2013

IRanges code

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1 msg · Aug 19

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Michael Lawrence IRanges code Aug 19, 2013

More than 4Mb

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2 msgs · Aug 25 – Aug 25

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Hernandez Ferrer, Carles More than 4Mb Aug 25, 2013

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Martin Morgan More than 4Mb Aug 25, 2013

New Bioconductor package: intansv

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1 msg · Aug 29

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Wen Yao New Bioconductor package: intansv Aug 29, 2013

Package Build RSS feeds now available

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8 msgs · Aug 6 – Aug 7

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Dan Tenenbaum Package Build RSS feeds now available Aug 6, 2013

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Laurent Gatto Package Build RSS feeds now available Aug 6, 2013

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Dan Tenenbaum Package Build RSS feeds now available Aug 6, 2013

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Dan Tenenbaum Package Build RSS feeds now available Aug 6, 2013

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Laurent Gatto Package Build RSS feeds now available Aug 7, 2013

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Kasper Daniel Hansen Package Build RSS feeds now available Aug 7, 2013

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Henrik Bengtsson Package Build RSS feeds now available Aug 7, 2013

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Dan Tenenbaum Package Build RSS feeds now available Aug 7, 2013

Parsing Error for UCSC Table

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1 msg · Aug 10

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Dario Strbenac Parsing Error for UCSC Table Aug 10, 2013

RDAVIDWebService: Set Enrichment Analysis in DAVID through R

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1 msg · Aug 9

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Cristobal Fresno Rodríguez RDAVIDWebService: Set Enrichment Analysis in DAVID through R Aug 9, 2013

Rsamtools Unable to Compile on FreeBSD 9.1

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1 msg · Aug 18

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Martin Morgan Rsamtools Unable to Compile on FreeBSD 9.1 Aug 18, 2013

Running Time of readBamGappedAlignmentPairs

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5 msgs · Aug 2 – Aug 6

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Martin Morgan Running Time of readBamGappedAlignmentPairs Aug 2, 2013

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Michael Lawrence Running Time of readBamGappedAlignmentPairs Aug 2, 2013

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Martin Morgan Running Time of readBamGappedAlignmentPairs Aug 2, 2013

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Michael Lawrence Running Time of readBamGappedAlignmentPairs Aug 2, 2013

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Dario Strbenac Running Time of readBamGappedAlignmentPairs Aug 6, 2013

Splitting design matrix contrast pivoting logic into a separate function?

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1 msg · Aug 29

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Ryan Splitting design matrix contrast pivoting logic into a separate function? Aug 29, 2013

SummarizedExperiment and recent changes in GenomicRanges

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10 msgs · Aug 1 – Aug 2

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Kasper Daniel Hansen SummarizedExperiment and recent changes in GenomicRanges Aug 1, 2013

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Hector Corrada Bravo SummarizedExperiment and recent changes in GenomicRanges Aug 1, 2013

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Kasper Daniel Hansen SummarizedExperiment and recent changes in GenomicRanges Aug 1, 2013

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Kasper Daniel Hansen SummarizedExperiment and recent changes in GenomicRanges Aug 1, 2013

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Hector Corrada Bravo SummarizedExperiment and recent changes in GenomicRanges Aug 1, 2013

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Kasper Daniel Hansen SummarizedExperiment and recent changes in GenomicRanges Aug 1, 2013

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Kasper Daniel Hansen SummarizedExperiment and recent changes in GenomicRanges Aug 1, 2013

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Hector Corrada Bravo SummarizedExperiment and recent changes in GenomicRanges Aug 2, 2013

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Michael Lawrence SummarizedExperiment and recent changes in GenomicRanges Aug 2, 2013

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Hector Corrada Bravo SummarizedExperiment and recent changes in GenomicRanges Aug 2, 2013

Very slow when operate GRangesList

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6 msgs · Aug 21 – Aug 27

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Ou, Jianhong Very slow when operate GRangesList Aug 21, 2013

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Michael Lawrence Very slow when operate GRangesList Aug 22, 2013

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Valerie Obenchain Very slow when operate GRangesList Aug 23, 2013

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Michael Lawrence Very slow when operate GRangesList Aug 23, 2013

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Valerie Obenchain Very slow when operate GRangesList Aug 27, 2013

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Ou, Jianhong Very slow when operate GRangesList Aug 27, 2013

cummeRbund installation Error

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1 msg · Aug 12

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Dan Tenenbaum cummeRbund installation Error Aug 12, 2013

lmdme: Linear Models for Designed Multivariate Experiments

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1 msg · Aug 9

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Cristobal Fresno Rodríguez lmdme: Linear Models for Designed Multivariate Experiments Aug 9, 2013

new OmicCircos released

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2 msgs · Aug 8 – Aug 8

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Hu, Ying (NIH/NCI) [E] new OmicCircos released Aug 8, 2013

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Steve Lianoglou new OmicCircos released Aug 8, 2013

org-mode vignettes

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11 msgs · Aug 28 – Aug 30

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Wolfgang Huber org-mode vignettes Aug 28, 2013

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Sean Davis org-mode vignettes Aug 28, 2013

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Martin Morgan org-mode vignettes Aug 28, 2013

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Wolfgang Huber org-mode vignettes Aug 28, 2013

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Martin Morgan org-mode vignettes Aug 28, 2013

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Charles C. Berry org-mode vignettes Aug 28, 2013

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Dan Tenenbaum org-mode vignettes Aug 28, 2013

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Michael Lawrence org-mode vignettes Aug 28, 2013

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Yihui Xie org-mode vignettes Aug 29, 2013

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Sean Davis org-mode vignettes Aug 30, 2013

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Yihui Xie org-mode vignettes Aug 30, 2013

read SBML file from BiGG database, unit consistency check

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3 msgs · Aug 5 – Aug 7

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hettling read SBML file from BiGG database, unit consistency check Aug 5, 2013

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Michael Lawrence read SBML file from BiGG database, unit consistency check Aug 6, 2013

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hettling read SBML file from BiGG database, unit consistency check Aug 7, 2013

session info of Single Package Builder Machines

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3 msgs · Aug 7 – Aug 7

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hettling session info of Single Package Builder Machines Aug 7, 2013

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Dan Tenenbaum session info of Single Package Builder Machines Aug 7, 2013

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Hettling, J. session info of Single Package Builder Machines Aug 7, 2013

setdiff error (GenomicRanges)

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1 msg · Aug 29

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Michael Stadler setdiff error (GenomicRanges) Aug 29, 2013

shiny, Bioconductor, and reproducible research

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1 msg · Aug 1

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Joe Cheng shiny, Bioconductor, and reproducible research Aug 1, 2013

texi2dvi error on package build

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1 msg · Aug 1

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Steve Piccolo texi2dvi error on package build Aug 1, 2013

the character to collapse the geneNames when using the disjointExons function with aggregateGenes=TRUE

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3 msgs · Aug 1 – Aug 2

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Nicolas Delhomme the character to collapse the geneNames when using the disjointExons function with aggregateGenes=TRUE Aug 1, 2013

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Valerie Obenchain the character to collapse the geneNames when using the disjointExons function with aggregateGenes=TRUE Aug 1, 2013

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Nicolas Delhomme the character to collapse the geneNames when using the disjointExons function with aggregateGenes=TRUE Aug 2, 2013