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Bioc-devel December 2013

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Arora, Sonali

Last active: Dec 27, 2013
4 msgs
Arora, Sonali request: high-level seqlevel utilities Dec 16, 2013 Arora, Sonali request: high-level seqlevel utilities Dec 24, 2013 Arora, Sonali request: high-level seqlevel utilities Dec 27, 2013 Arora, Sonali request: high-level seqlevel utilities Dec 27, 2013

Dan Tenenbaum

Last active: Dec 17, 2013
7 msgs
Dan Tenenbaum Struggles with correct import ..... Dec 3, 2013 Dan Tenenbaum Struggles with correct import ..... Dec 4, 2013 Dan Tenenbaum How to update a release package? Dec 4, 2013 Dan Tenenbaum Package archives Dec 5, 2013 Dan Tenenbaum Errors in recent updates of MiRaGE development release Dec 9, 2013 Dan Tenenbaum edgeR crashes when xlsxjars is loaded Dec 16, 2013 Dan Tenenbaum sequencing workflow Dec 17, 2013

Dario Strbenac

Last active: Dec 2, 2013
2 msgs
Dario Strbenac IlluminaID2nuID Incorrectly Uses If Statement Dec 1, 2013 Dario Strbenac IlluminaID2nuID Incorrectly Uses If Statement Dec 2, 2013

Gang Feng

Last active: Dec 2, 2013
1 msg
Gang Feng IlluminaID2nuID Incorrectly Uses If Statement Dec 2, 2013

Hahne, Florian

Last active: Dec 11, 2013
1 msg
Hahne, Florian forgeBSgenomeDataPkg and gzipped files Dec 11, 2013

Hervé Pagès

Last active: Dec 21, 2013
21 msgs
Hervé Pagès GenomicRanges: Storing 'seqlengths' as numeric Dec 3, 2013 Hervé Pagès GenomicRanges: Storing 'seqlengths' as numeric Dec 3, 2013 Hervé Pagès XVector: abstraction Dec 8, 2013 Hervé Pagès XVector: abstraction Dec 9, 2013 Hervé Pagès XVector: abstraction Dec 9, 2013 Hervé Pagès new GenomicAlignments package Dec 9, 2013 Hervé Pagès forgeBSgenomeDataPkg and gzipped files Dec 11, 2013 Hervé Pagès ordering GenomicRanges without regard for strand Dec 12, 2013 Hervé Pagès Consistency between miRNATarget and MiRaGE Dec 13, 2013 Hervé Pagès error when install ŒRsamtools¹, ŒGenomicAlignments¹ and Œrtracklayer¹ Dec 13, 2013 Hervé Pagès equivalent of seqselect,vector,Rle Dec 13, 2013 Hervé Pagès equivalent of seqselect,vector,Rle Dec 13, 2013 Hervé Pagès equivalent of seqselect,vector,Rle Dec 13, 2013 Hervé Pagès ordering GenomicRanges without regard for strand Dec 16, 2013 Hervé Pagès readGAlignmentPairs function broken? Dec 19, 2013 Hervé Pagès readGAlignmentPairs function broken? Dec 19, 2013 Hervé Pagès alphabetFrequency on AAString Dec 20, 2013 Hervé Pagès very slow to use intronsByTranscript in GenomicFeatures Dec 20, 2013 Hervé Pagès very slow to use intronsByTranscript in GenomicFeatures Dec 20, 2013 Hervé Pagès readGAlignmentPairs function broken? Dec 20, 2013 Hervé Pagès Consistency between miRNATarget and MiRaGE Dec 21, 2013

James W. MacDonald

Last active: Dec 20, 2013
2 msgs
James W. MacDonald How to update a release package? Dec 4, 2013 James W. MacDonald very slow to use intronsByTranscript in GenomicFeatures Dec 20, 2013

Julian Gehring

Last active: Dec 30, 2013
5 msgs
Julian Gehring GenomicRanges: Storing 'seqlengths' as numeric Dec 3, 2013 Julian Gehring VariantAnnotation: Convertion from VCF to VRanges for CG example VCF Dec 7, 2013 Julian Gehring VariantAnnotation: Convertion from VCF to VRanges for CG example VCF Dec 12, 2013 Julian Gehring request: high-level seqlevel utilities Dec 16, 2013 Julian Gehring request: high-level seqlevel utilities Dec 30, 2013

Kasper Daniel Hansen

Last active: Dec 19, 2013
7 msgs
Kasper Daniel Hansen GenomicRanges: Storing 'seqlengths' as numeric Dec 3, 2013 Kasper Daniel Hansen Struggles with correct import ..... Dec 3, 2013 Kasper Daniel Hansen GenomicRanges: Storing 'seqlengths' as numeric Dec 5, 2013 Kasper Daniel Hansen Package archives Dec 5, 2013 Kasper Daniel Hansen XVector: abstraction Dec 9, 2013 Kasper Daniel Hansen ordering GenomicRanges without regard for strand Dec 12, 2013 Kasper Daniel Hansen codetoolsBioC does not suggest methods from packages not defining generic Dec 19, 2013

Laurent Gautier

Last active: Dec 9, 2013
1 msg
Laurent Gautier XVector: abstraction Dec 9, 2013

Leonard Goldstein

Last active: Dec 19, 2013
3 msgs
Leonard Goldstein readGAlignmentPairs function broken? Dec 18, 2013 Leonard Goldstein readGAlignmentPairs function broken? Dec 19, 2013 Leonard Goldstein readGAlignmentPairs function broken? Dec 19, 2013

Luo Weijun

Last active: Dec 19, 2013
2 msgs
Luo Weijun Bulky installation and loading triggered by function import Dec 19, 2013 Luo Weijun Bulky installation and loading triggered by function import Dec 19, 2013

Markus Riester

Last active: Dec 30, 2013
1 msg
Markus Riester GSVA and LumiBatch objects Dec 30, 2013

Martin Maechler

Last active: Dec 4, 2013
2 msgs
Martin Maechler Struggles with correct import ..... Dec 3, 2013 Martin Maechler Struggles with correct import ..... Dec 4, 2013

Martin Morgan

Last active: Dec 19, 2013
11 msgs
Martin Morgan GenomicRanges: Storing 'seqlengths' as numeric Dec 3, 2013 Martin Morgan Conflict between BiocStyle and the verbatim package Dec 3, 2013 Martin Morgan Rsamtools BAM > SAM? Dec 5, 2013 Martin Morgan Rsamtools BAM > SAM? Dec 5, 2013 Martin Morgan Conflict between BiocStyle and the verbatim package Dec 11, 2013 Martin Morgan New Seattle Bioconductor group members Dec 16, 2013 Martin Morgan edgeR crashes when xlsxjars is loaded Dec 16, 2013 Martin Morgan edgeR crashes when xlsxjars is loaded Dec 16, 2013 Martin Morgan codetoolsBioC does not suggest methods from packages not defining generic Dec 19, 2013 Martin Morgan Bulky installation and loading triggered by function import Dec 19, 2013 Martin Morgan how to use footnote in BiocStyle Dec 19, 2013

Michael Lawrence

Last active: Dec 27, 2013
23 msgs
Michael Lawrence feature request: pmax for columns of DataFrame objects Dec 2, 2013 Michael Lawrence feature request: pmax for columns of DataFrame objects Dec 2, 2013 Michael Lawrence Rsamtools BAM > SAM? Dec 5, 2013 Michael Lawrence XVector: block-wise compressed rda Dec 5, 2013 Michael Lawrence XVector: abstraction Dec 5, 2013 Michael Lawrence readGAlignmentsList and read groups Dec 5, 2013 Michael Lawrence XVector: abstraction Dec 9, 2013 Michael Lawrence XVector: abstraction Dec 9, 2013 Michael Lawrence request: high-level seqlevel utilities Dec 12, 2013 Michael Lawrence ordering GenomicRanges without regard for strand Dec 12, 2013 Michael Lawrence equivalent of seqselect,vector,Rle Dec 13, 2013 Michael Lawrence equivalent of seqselect,vector,Rle Dec 13, 2013 Michael Lawrence equivalent of seqselect,vector,Rle Dec 13, 2013 Michael Lawrence request: high-level seqlevel utilities Dec 16, 2013 Michael Lawrence request: high-level seqlevel utilities Dec 16, 2013 Michael Lawrence request: high-level seqlevel utilities Dec 16, 2013 Michael Lawrence sequencing workflow Dec 17, 2013 Michael Lawrence codetoolsBioC does not suggest methods from packages not defining generic Dec 19, 2013 Michael Lawrence codetoolsBioC does not suggest methods from packages not defining generic Dec 19, 2013 Michael Lawrence codetoolsBioC does not suggest methods from packages not defining generic Dec 19, 2013 Michael Lawrence request: high-level seqlevel utilities Dec 25, 2013 Michael Lawrence request: high-level seqlevel utilities Dec 27, 2013 Michael Lawrence request: high-level seqlevel utilities Dec 27, 2013

Michael Love

Last active: Dec 24, 2013
1 msg
Michael Love BigWigViews Dec 24, 2013

Nicolas Delhomme

Last active: Dec 11, 2013
3 msgs
Nicolas Delhomme Conflict between BiocStyle and the verbatim package Dec 3, 2013 Nicolas Delhomme GenomicRanges: Storing 'seqlengths' as numeric Dec 5, 2013 Nicolas Delhomme Conflict between BiocStyle and the verbatim package Dec 11, 2013

Ou, Jianhong

Last active: Dec 20, 2013
9 msgs
Ou, Jianhong error when install ŒRsamtools¹, ŒGenomicAlignments¹ and Œrtracklayer¹ Dec 13, 2013 Ou, Jianhong error when install ŒRsamtools¹, ŒGenomicAlignments¹ and Œrtracklayer¹ Dec 13, 2013 Ou, Jianhong how to use footnote in BiocStyle Dec 19, 2013 Ou, Jianhong simple question about floor Dec 19, 2013 Ou, Jianhong simple question about floor Dec 20, 2013 Ou, Jianhong very slow to use intronsByTranscript in GenomicFeatures Dec 20, 2013 Ou, Jianhong very slow to use intronsByTranscript in GenomicFeatures Dec 20, 2013 Ou, Jianhong very slow to use intronsByTranscript in GenomicFeatures Dec 20, 2013 Ou, Jianhong how to use footnote in BiocStyle Dec 20, 2013

Robert Castelo

Last active: Dec 20, 2013
3 msgs
Robert Castelo feature request: pmax for columns of DataFrame objects Dec 2, 2013 Robert Castelo feature request: pmax for columns of DataFrame objects Dec 2, 2013 Robert Castelo very slow to use intronsByTranscript in GenomicFeatures Dec 20, 2013

Ryan

Last active: Dec 16, 2013
5 msgs
Ryan edgeR crashes when xlsxjars is loaded Dec 16, 2013 Ryan edgeR crashes when xlsxjars is loaded Dec 16, 2013 Ryan edgeR crashes when xlsxjars is loaded Dec 16, 2013 Ryan edgeR crashes when xlsxjars is loaded Dec 16, 2013 Ryan edgeR crashes when xlsxjars is loaded Dec 16, 2013

Setia Pramana

Last active: Dec 4, 2013
1 msg
Setia Pramana How to update a release package? Dec 4, 2013

Stephanie M. Gogarten

Last active: Dec 20, 2013
2 msgs
Stephanie M. Gogarten asVCF error coming from normalizeSingleBracketSubscript Dec 9, 2013 Stephanie M. Gogarten Job opening: Research Scientist in Biostatistics (Seattle, WA) Dec 20, 2013

Steve Lianoglou

Last active: Dec 16, 2013
2 msgs
Steve Lianoglou edgeR crashes when xlsxjars is loaded Dec 16, 2013 Steve Lianoglou edgeR crashes when xlsxjars is loaded Dec 16, 2013

Steven McKinney

Last active: Dec 19, 2013
1 msg
Steven McKinney simple question about floor Dec 19, 2013

Taku Tokuyasu

Last active: Dec 9, 2013
1 msg
Taku Tokuyasu Rsamtools BAM > SAM? Dec 9, 2013

Tim Triche, Jr.

Last active: Dec 27, 2013
2 msgs
Tim Triche, Jr. ordering GenomicRanges without regard for strand Dec 12, 2013 Tim Triche, Jr. request: high-level seqlevel utilities Dec 27, 2013

Valerie Obenchain

Last active: Dec 27, 2013
8 msgs
Valerie Obenchain VariantAnnotation writeVcf problem Dec 2, 2013 Valerie Obenchain [Bioc-devel] [VariantAnnotation] Dec 2, 2013 Valerie Obenchain Rsamtools BAM > SAM? Dec 5, 2013 Valerie Obenchain readGAlignmentsList and read groups Dec 5, 2013 Valerie Obenchain VariantAnnotation: Convertion from VCF to VRanges for CG example VCF Dec 9, 2013 Valerie Obenchain VariantAnnotation: Convertion from VCF to VRanges for CG example VCF Dec 12, 2013 Valerie Obenchain BigWigViews Dec 24, 2013 Valerie Obenchain request: high-level seqlevel utilities Dec 27, 2013

Y-h. Taguchi

Last active: Dec 10, 2013
2 msgs
Y-h. Taguchi Errors in recent updates of MiRaGE development release Dec 9, 2013 Y-h. Taguchi Consistency between miRNATarget and MiRaGE Dec 10, 2013

jens timmerman

Last active: Dec 5, 2013
1 msg
jens timmerman Package archives Dec 5, 2013