Bioc-devel July 2014

[Bioc-devel] subset fails on a DataFrame with 0 cols

3 msgs Jul 29

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Hervé Pagès subset fails on a DataFrame with 0 cols Jul 28, 2014

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Michael Lawrence subset fails on a DataFrame with 0 cols Jul 28, 2014

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Hervé Pagès subset fails on a DataFrame with 0 cols Jul 29, 2014

[Bioc-devel] affycoretools in devel failed to install

1 msg Jul 29

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Dan Tenenbaum affycoretools in devel failed to install Jul 29, 2014

[Bioc-devel] affycoretools in devel failed to install

2 msgs Jul 29

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Martin Morgan affycoretools in devel failed to install Jul 29, 2014

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Vojtech Kulvait affycoretools in devel failed to install Jul 29, 2014

[Bioc-devel] affycoretools in devel failed to install

7 msgs Jul 29

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Vojtech Kulvait affycoretools in devel failed to install Jul 25, 2014

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Dan Tenenbaum affycoretools in devel failed to install Jul 25, 2014

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James W. MacDonald affycoretools in devel failed to install Jul 25, 2014

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Martin Morgan affycoretools in devel failed to install Jul 25, 2014

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Vojtech Kulvait affycoretools in devel failed to install Jul 29, 2014

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Vojtech Kulvait affycoretools in devel failed to install Jul 29, 2014

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Vojtech Kulvait affycoretools in devel failed to install Jul 29, 2014

[Bioc-devel] Introduction of me Vojtech Kulvait and the package blima

1 msg Jul 29

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Vojtech Kulvait Introduction of me Vojtech Kulvait and the package blima Jul 29, 2014

[Bioc-devel] dealing with GRCh38 build

4 msgs Jul 28

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Vincent Carey dealing with GRCh38 build Jul 28, 2014

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Vincent Carey dealing with GRCh38 build Jul 28, 2014

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Marc Carlson dealing with GRCh38 build Jul 28, 2014

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Vincent Carey dealing with GRCh38 build Jul 28, 2014

[Bioc-devel] changing genome of TxDb

1 msg Jul 25

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Hervé Pagès changing genome of TxDb Jul 25, 2014

[Bioc-devel] Update on keepStandardChromsomes() in GenomeInfoDb

1 msg Jul 25

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Arora, Sonali Update on keepStandardChromsomes() in GenomeInfoDb Jul 25, 2014

[Bioc-devel] Distinction between release and devel package websites

4 msgs Jul 25

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Leonardo Collado Torres Distinction between release and devel package websites Jul 23, 2014

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Martin Morgan Distinction between release and devel package websites Jul 23, 2014

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Leonardo Collado Torres Distinction between release and devel package websites Jul 23, 2014

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Martin Morgan Distinction between release and devel package websites Jul 25, 2014

[Bioc-devel] Distinction between release and devel package websites

1 msg Jul 24

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Dan Tenenbaum Distinction between release and devel package websites Jul 24, 2014

[Bioc-devel] Distinction between release and devel package websites

37 msgs Jul 24

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Julian Gehring Distinction between release and devel package websites Jul 21, 2014

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Vincent Carey Distinction between release and devel package websites Jul 21, 2014

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Michael Lawrence Distinction between release and devel package websites Jul 21, 2014

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Hervé Pagès Distinction between release and devel package websites Jul 21, 2014

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Julian Gehring Distinction between release and devel package websites Jul 22, 2014

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Dan Tenenbaum Distinction between release and devel package websites Jul 22, 2014

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James W. MacDonald Distinction between release and devel package websites Jul 22, 2014

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Dan Tenenbaum Distinction between release and devel package websites Jul 22, 2014

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Vincent Carey Distinction between release and devel package websites Jul 22, 2014

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Andrzej Oleś Distinction between release and devel package websites Jul 22, 2014

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Michael Lawrence Distinction between release and devel package websites Jul 22, 2014

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Dan Tenenbaum Distinction between release and devel package websites Jul 22, 2014

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Matthew McCall Distinction between release and devel package websites Jul 22, 2014

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James W. MacDonald Distinction between release and devel package websites Jul 22, 2014

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Dan Tenenbaum Distinction between release and devel package websites Jul 22, 2014

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Dan Tenenbaum Distinction between release and devel package websites Jul 22, 2014

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Michael Lawrence Distinction between release and devel package websites Jul 22, 2014

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Matthew McCall Distinction between release and devel package websites Jul 22, 2014

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Ryan Distinction between release and devel package websites Jul 22, 2014

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Martin Morgan Distinction between release and devel package websites Jul 22, 2014

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Hervé Pagès Distinction between release and devel package websites Jul 22, 2014

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Andrzej Oleś Distinction between release and devel package websites Jul 22, 2014

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Gabriel Becker Distinction between release and devel package websites Jul 22, 2014

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Dan Tenenbaum Distinction between release and devel package websites Jul 22, 2014

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Michael Lawrence Distinction between release and devel package websites Jul 22, 2014

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Julian Gehring Distinction between release and devel package websites Jul 22, 2014

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Andrzej Oleś Distinction between release and devel package websites Jul 22, 2014

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Andrzej Oleś Distinction between release and devel package websites Jul 22, 2014

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Andrzej Oleś Distinction between release and devel package websites Jul 22, 2014

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Vincent Carey Distinction between release and devel package websites Jul 22, 2014

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Martin Morgan Distinction between release and devel package websites Jul 22, 2014

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Martin Morgan Distinction between release and devel package websites Jul 23, 2014

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Martin Morgan Distinction between release and devel package websites Jul 23, 2014

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Hervé Pagès Distinction between release and devel package websites Jul 23, 2014

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Henrik Bengtsson Distinction between release and devel package websites Jul 24, 2014

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Hervé Pagès Distinction between release and devel package websites Jul 24, 2014

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Henrik Bengtsson Distinction between release and devel package websites Jul 24, 2014

[Bioc-devel] A new way to manage side-by-side BioC release and Devel installs

3 msgs Jul 24

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Gabriel Becker A new way to manage side-by-side BioC release and Devel installs Jul 24, 2014

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Hervé Pagès A new way to manage side-by-side BioC release and Devel installs Jul 24, 2014

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Gabriel Becker A new way to manage side-by-side BioC release and Devel installs Jul 24, 2014

[Bioc-devel] changing genome of TxDb

1 msg Jul 24

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Michael Lawrence changing genome of TxDb Jul 24, 2014

[Bioc-devel] [bug] goseq fails when dplyr has been loaded

2 msgs Jul 24

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Martin Morgan goseq fails when dplyr has been loaded Jul 13, 2014

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Keith Hughitt goseq fails when dplyr has been loaded Jul 24, 2014

[Bioc-devel] NAMESPACE problem in MacOS with VariantFiltering

4 msgs Jul 23

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Dan Tenenbaum NAMESPACE problem in MacOS with VariantFiltering Jul 22, 2014

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Robert Castelo NAMESPACE problem in MacOS with VariantFiltering Jul 22, 2014

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Martin Morgan NAMESPACE problem in MacOS with VariantFiltering Jul 22, 2014

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Robert Castelo NAMESPACE problem in MacOS with VariantFiltering Jul 23, 2014

[Bioc-devel] NAMESPACE problem in MacOS with VariantFiltering

1 msg Jul 22

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Robert Castelo NAMESPACE problem in MacOS with VariantFiltering Jul 22, 2014

[Bioc-devel] Bioc 2014 July 31 - August 1, Boston

1 msg Jul 17

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Martin Morgan Bioc 2014 July 31 - August 1, Boston Jul 17, 2014

[Bioc-devel] ggbio 1.13.11 fails to load due to namespace change in IRanges

4 msgs Jul 16

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Leonardo Collado Torres ggbio 1.13.11 fails to load due to namespace change in IRanges Jul 16, 2014

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Martin Morgan ggbio 1.13.11 fails to load due to namespace change in IRanges Jul 16, 2014

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Michael Lawrence ggbio 1.13.11 fails to load due to namespace change in IRanges Jul 16, 2014

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Hervé Pagès ggbio 1.13.11 fails to load due to namespace change in IRanges Jul 16, 2014

[Bioc-devel] R: Re: Deseq2 and differentia expression

1 msg Jul 14

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jarod_v6 at libero.it R: Re: Deseq2 and differentia expression Jul 14, 2014

[Bioc-devel] [bug] goseq fails when dplyr has been loaded

2 msgs Jul 13

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Keith Hughitt goseq fails when dplyr has been loaded Jul 12, 2014

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Keith Hughitt goseq fails when dplyr has been loaded Jul 13, 2014

[Bioc-devel] [feature-request] IRanges: add support for dplyr tbl_df dataframes

2 msgs Jul 12

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Keith Hughitt IRanges: add support for dplyr tbl_df dataframes Jul 12, 2014

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Michael Lawrence IRanges: add support for dplyr tbl_df dataframes Jul 12, 2014

[Bioc-devel] R: Re: Deseq2 and differentia expression

3 msgs Jul 12

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jarod_v6 at libero.it R: Re: Deseq2 and differentia expression Jul 11, 2014

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Michael Love Deseq2 and differentia expression Jul 11, 2014

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Simon Anders R: Re: Deseq2 and differentia expression Jul 12, 2014

[Bioc-devel] Possible bug in edgeR::aveLogCPM.default?

2 msgs Jul 11

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Ryan Possible bug in edgeR::aveLogCPM.default? Jul 11, 2014

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Gordon K Smyth Possible bug in edgeR::aveLogCPM.default? Jul 11, 2014

[Bioc-devel] R: Re: Re: Deseq2 and differentia expression

2 msgs Jul 11

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jarod_v6 at libero.it R: Re: Re: Deseq2 and differentia expression Jul 11, 2014

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Michael Love R: Re: Re: Deseq2 and differentia expression Jul 11, 2014

[Bioc-devel] MicroRNA analisys

2 msgs Jul 11

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jarod_v6 at libero.it MicroRNA analisys Jul 11, 2014

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Michael Love MicroRNA analisys Jul 11, 2014

[Bioc-devel] GOHyperGParams Minimum Size

1 msg Jul 10

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Dario Strbenac GOHyperGParams Minimum Size Jul 10, 2014

[Bioc-devel] range-directed metadata management

4 msgs Jul 10

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Vincent Carey range-directed metadata management Jul 10, 2014

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Steve Lianoglou range-directed metadata management Jul 10, 2014

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Michael Lawrence range-directed metadata management Jul 10, 2014

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Vincent Carey range-directed metadata management Jul 10, 2014

[Bioc-devel] Announcement: C++/Mavericks Best Practices guide posted

1 msg Jul 10

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Nathaniel Hayden Announcement: C++/Mavericks Best Practices guide posted Jul 10, 2014

[Bioc-devel] Deseq2 and differentia expression

2 msgs Jul 10

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jarod_v6 at libero.it Deseq2 and differentia expression Jul 10, 2014

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Michael Love Deseq2 and differentia expression Jul 10, 2014

[Bioc-devel] Confusing namespace issue with IRanges 1.99.17

6 msgs Jul 9

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Martin Morgan Confusing namespace issue with IRanges 1.99.17 Jul 8, 2014

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Michael Lawrence Confusing namespace issue with IRanges 1.99.17 Jul 8, 2014

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Hervé Pagès Confusing namespace issue with IRanges 1.99.17 Jul 8, 2014

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Leonardo Collado Torres Confusing namespace issue with IRanges 1.99.17 Jul 8, 2014

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Hervé Pagès Confusing namespace issue with IRanges 1.99.17 Jul 8, 2014

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Stephanie M. Gogarten Confusing namespace issue with IRanges 1.99.17 Jul 9, 2014

[Bioc-devel] Question about updating the release version of a package

3 msgs Jul 9

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Ed Question about updating the release version of a package Jul 9, 2014

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Martin Morgan Question about updating the release version of a package Jul 9, 2014

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Ed Question about updating the release version of a package Jul 9, 2014

[Bioc-devel] makeTranscriptDbFrom... AnnotationHub

2 msgs Jul 8

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Michael Love makeTranscriptDbFrom... AnnotationHub Jul 8, 2014

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Hervé Pagès makeTranscriptDbFrom... AnnotationHub Jul 8, 2014

[Bioc-devel] [BioC] granges() method for GenomicRanges objects akin to ranges()...

2 msgs Jul 8

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Michael Lawrence granges() method for GenomicRanges objects akin to ranges()... Jul 8, 2014

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Hervé Pagès granges() method for GenomicRanges objects akin to ranges()... Jul 8, 2014

[Bioc-devel] [BioC] granges() method for GenomicRanges objects akin to ranges()...

1 msg Jul 8

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Hervé Pagès granges() method for GenomicRanges objects akin to ranges()... Jul 8, 2014

[Bioc-devel] Confusing namespace issue with IRanges 1.99.17

1 msg Jul 7

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Leonardo Collado Torres Confusing namespace issue with IRanges 1.99.17 Jul 7, 2014

[Bioc-devel] Quickly approaching: BioC 2014, Boston, July 31 - Aug 1

1 msg Jul 2

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Martin Morgan Quickly approaching: BioC 2014, Boston, July 31 - Aug 1 Jul 2, 2014

[Bioc-devel] GIntervalTree objects are corrupted during save/load

10 msgs Jul 1

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Kristoffer Vitting-Seerup GIntervalTree objects are corrupted during save/load Jun 30, 2014

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Hector Corrada Bravo GIntervalTree objects are corrupted during save/load Jul 1, 2014

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Michael Lawrence GIntervalTree objects are corrupted during save/load Jul 1, 2014

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Hector Corrada Bravo GIntervalTree objects are corrupted during save/load Jul 1, 2014

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Michael Lawrence GIntervalTree objects are corrupted during save/load Jul 1, 2014

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Hervé Pagès GIntervalTree objects are corrupted during save/load Jul 1, 2014

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Hector Corrada Bravo GIntervalTree objects are corrupted during save/load Jul 1, 2014

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Michael Lawrence GIntervalTree objects are corrupted during save/load Jul 1, 2014

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Hervé Pagès GIntervalTree objects are corrupted during save/load Jul 1, 2014

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Michael Lawrence GIntervalTree objects are corrupted during save/load Jul 1, 2014

[Bioc-devel] Bioconductor newsletter - July 2014

1 msg Jul 1

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Valerie Obenchain Bioconductor newsletter - July 2014 Jul 1, 2014

[Bioc-devel] Seqlengths not set in TxDb.Athaliana.BioMart.plantsmart19

1 msg Jun 30