Skip to content

Bioc-devel November 2014

|

Dan Tenenbaum

Last active: Nov 26, 2014
17 msgs
Dan Tenenbaum More than 1 citation in landing page Nov 1, 2014 Dan Tenenbaum Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 2, 2014 Dan Tenenbaum error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014 Dan Tenenbaum error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014 Dan Tenenbaum Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 5, 2014 Dan Tenenbaum Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 5, 2014 Dan Tenenbaum please "watch" the tags on the support site that correspond to packages you maintain Nov 7, 2014 Dan Tenenbaum please "watch" the tags on the support site that correspond to packages you maintain Nov 9, 2014 Dan Tenenbaum PPA with built bioconductor packages (for continuous integration) Nov 9, 2014 Dan Tenenbaum Error when creating git-svn bridge Nov 10, 2014 Dan Tenenbaum PPA with built bioconductor packages (for continuous integration) Nov 10, 2014 Dan Tenenbaum Github link broken? Nov 13, 2014 Dan Tenenbaum Help with creating first Bioconductor package Nov 14, 2014 Dan Tenenbaum Help with creating first Bioconductor package Nov 14, 2014 Dan Tenenbaum MacOS-specific error in VariantAnnotation::locateVariants() in devel Nov 21, 2014 Dan Tenenbaum BioC 3.0 CHECK ERROR Nov 26, 2014 Dan Tenenbaum BioC 3.0 CHECK ERROR Nov 26, 2014

Gabriel Becker

Last active: Nov 10, 2014
2 msgs
Gabriel Becker R-devel update schedule/strategy for Bioc devel build machines Nov 3, 2014 Gabriel Becker bioc pkgs depending on packages that are only in github? Nov 10, 2014

Hahne, Florian

Last active: Nov 10, 2014
3 msgs
Hahne, Florian error: 2 arguments passed to .Internal(ls) which requires 3 Nov 5, 2014 Hahne, Florian Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 5, 2014 Hahne, Florian Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 10, 2014

Hector Corrada Bravo

Last active: Nov 26, 2014
1 msg
Hector Corrada Bravo SummarizedExperiment vs ExpressionSet Nov 26, 2014

Henrik Bengtsson

Last active: Nov 18, 2014
1 msg
Henrik Bengtsson Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 18, 2014

Hervé Pagès

Last active: Nov 26, 2014
3 msgs
Hervé Pagès Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 4, 2014 Hervé Pagès Changes to Hits class in devel branch affecting distanceToNearest method Nov 5, 2014 Hervé Pagès SummarizedExperiment vs ExpressionSet Nov 26, 2014

January Weiner

Last active: Nov 15, 2014
3 msgs
January Weiner Help with creating first Bioconductor package Nov 14, 2014 January Weiner Help with creating first Bioconductor package Nov 14, 2014 January Weiner Help with creating first Bioconductor package Nov 15, 2014

Joachim Schumann

Last active: Nov 28, 2014
2 msgs
Joachim Schumann BioC 3.0 CHECK ERROR Nov 26, 2014 Joachim Schumann BioC 3.0 CHECK ERROR Nov 28, 2014

Joseph Nathaniel Paulson

Last active: Nov 14, 2014
2 msgs
Joseph Nathaniel Paulson Github link broken? Nov 13, 2014 Joseph Nathaniel Paulson Github link broken? Nov 14, 2014

Jovana Maksimovic

Last active: Nov 18, 2014
1 msg
Jovana Maksimovic Error when using read.450k.exp from minfi 1.13.1 Nov 18, 2014

Julian Gehring

Last active: Nov 14, 2014
1 msg
Julian Gehring Help with creating first Bioconductor package Nov 14, 2014

Karl Stamm

Last active: Nov 24, 2014
2 msgs
Karl Stamm faster gene id conversion? Nov 21, 2014 Karl Stamm faster gene id conversion? Nov 24, 2014

Kasper Daniel Hansen

Last active: Nov 18, 2014
5 msgs
Kasper Daniel Hansen plotPCA for BiocGenerics Nov 1, 2014 Kasper Daniel Hansen Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 2, 2014 Kasper Daniel Hansen error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014 Kasper Daniel Hansen bioc pkgs depending on packages that are only in github? Nov 8, 2014 Kasper Daniel Hansen Error when using read.450k.exp from minfi 1.13.1 Nov 18, 2014

Laurent Gatto

Last active: Nov 26, 2014
10 msgs
Laurent Gatto biocValid vs biocLite Nov 3, 2014 Laurent Gatto error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014 Laurent Gatto error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014 Laurent Gatto error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014 Laurent Gatto error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014 Laurent Gatto error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014 Laurent Gatto error: 2 arguments passed to .Internal(ls) which requires 3 Nov 5, 2014 Laurent Gatto Help with creating first Bioconductor package Nov 14, 2014 Laurent Gatto proteomics/MS generic Nov 18, 2014 Laurent Gatto SummarizedExperiment vs ExpressionSet Nov 26, 2014

Laurent Gautier

Last active: Nov 10, 2014
3 msgs
Laurent Gautier PPA with built bioconductor packages (for continuous integration) Nov 9, 2014 Laurent Gautier PPA with built bioconductor packages (for continuous integration) Nov 10, 2014 Laurent Gautier PPA with built bioconductor packages (for continuous integration) Nov 10, 2014

Leonardo Collado Torres

Last active: Nov 5, 2014
3 msgs
Leonardo Collado Torres Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 2, 2014 Leonardo Collado Torres Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 2, 2014 Leonardo Collado Torres More than 1 citation in landing page Nov 5, 2014

Ludwig Geistlinger

Last active: Nov 29, 2014
1 msg
Ludwig Geistlinger supported organisms Nov 29, 2014

Martin Morgan

Last active: Nov 28, 2014
16 msgs
Martin Morgan error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014 Martin Morgan error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014 Martin Morgan Employment with the Bioconductor core team Nov 7, 2014 Martin Morgan bioc pkgs depending on packages that are only in github? Nov 8, 2014 Martin Morgan bioc pkgs depending on packages that are only in github? Nov 8, 2014 Martin Morgan PPA with built bioconductor packages (for continuous integration) Nov 9, 2014 Martin Morgan PPA with built bioconductor packages (for continuous integration) Nov 10, 2014 Martin Morgan Help with creating first Bioconductor package Nov 14, 2014 Martin Morgan Help with creating first Bioconductor package Nov 14, 2014 Martin Morgan Help with creating first Bioconductor package Nov 15, 2014 Martin Morgan ShortRead::FastqStreamer and parallelization Nov 18, 2014 Martin Morgan Fast accessor for assay names of SummarizedExperiment Nov 25, 2014 Martin Morgan BioC 3.0 CHECK ERROR Nov 26, 2014 Martin Morgan BioC 3.0 CHECK ERROR Nov 26, 2014 Martin Morgan BioC 3.0 CHECK ERROR Nov 26, 2014 Martin Morgan Regarding the function: oligonucleotideFrequency for k-mers > 11 bps Nov 28, 2014

Michael Lawrence

Last active: Nov 26, 2014
6 msgs
Michael Lawrence plotPCA for BiocGenerics Nov 2, 2014 Michael Lawrence bioc pkgs depending on packages that are only in github? Nov 8, 2014 Michael Lawrence bioc pkgs depending on packages that are only in github? Nov 9, 2014 Michael Lawrence SummarizedExperiment vs ExpressionSet Nov 26, 2014 Michael Lawrence SummarizedExperiment vs ExpressionSet Nov 26, 2014 Michael Lawrence SummarizedExperiment vs ExpressionSet Nov 26, 2014

Michael Love

Last active: Nov 1, 2014
2 msgs
Michael Love plotPCA for BiocGenerics Nov 1, 2014 Michael Love plotPCA for BiocGenerics Nov 1, 2014

Nathaniel Hayden

Last active: Nov 18, 2014
1 msg
Nathaniel Hayden plotPCA generic added to BiocGenerics package Nov 18, 2014

Peter Haverty

Last active: Nov 26, 2014
2 msgs
Peter Haverty SummarizedExperiment vs ExpressionSet Nov 26, 2014 Peter Haverty SummarizedExperiment vs ExpressionSet Nov 26, 2014

Peter Hickey

Last active: Nov 25, 2014
3 msgs
Peter Hickey Changes to Hits class in devel branch affecting distanceToNearest method Nov 5, 2014 Peter Hickey Changes to Hits class in devel branch affecting distanceToNearest method Nov 7, 2014 Peter Hickey Fast accessor for assay names of SummarizedExperiment Nov 25, 2014

Peter Humburg

Last active: Nov 10, 2014
1 msg
Peter Humburg Error when creating git-svn bridge Nov 10, 2014

Robert Castelo

Last active: Nov 21, 2014
2 msgs
Robert Castelo MacOS-specific error in VariantAnnotation::locateVariants() in devel Nov 21, 2014 Robert Castelo MacOS-specific error in VariantAnnotation::locateVariants() in devel Nov 21, 2014

Rodrigo Bertollo de Alexandre

Last active: Nov 27, 2014
1 msg
Rodrigo Bertollo de Alexandre Regarding the function: oligonucleotideFrequency for k-mers > 11 bps Nov 27, 2014

Sean Davis

Last active: Nov 24, 2014
2 msgs
Sean Davis faster gene id conversion? Nov 22, 2014 Sean Davis faster gene id conversion? Nov 24, 2014

Stephanie M. Gogarten

Last active: Nov 14, 2014
1 msg
Stephanie M. Gogarten Help with creating first Bioconductor package Nov 14, 2014

Thomas Girke

Last active: Nov 20, 2014
2 msgs
Thomas Girke BiocParallel-devel error Nov 19, 2014 Thomas Girke BiocParallel-devel error Nov 20, 2014

Tim Triche, Jr.

Last active: Nov 26, 2014
6 msgs
Tim Triche, Jr. plotPCA for BiocGenerics Nov 2, 2014 Tim Triche, Jr. bioc pkgs depending on packages that are only in github? Nov 8, 2014 Tim Triche, Jr. PPA with built bioconductor packages (for continuous integration) Nov 9, 2014 Tim Triche, Jr. PPA with built bioconductor packages (for continuous integration) Nov 10, 2014 Tim Triche, Jr. Help with creating first Bioconductor package Nov 14, 2014 Tim Triche, Jr. SummarizedExperiment vs ExpressionSet Nov 26, 2014

Tolkappiyan Premkumar

Last active: Nov 4, 2014
1 msg
Tolkappiyan Premkumar Trouble with loading R Packages from source control Nov 4, 2014

Ulrich Bodenhofer

Last active: Nov 28, 2014
1 msg
Ulrich Bodenhofer Regarding the function: oligonucleotideFrequency for k-mers > 11 bps Nov 28, 2014

Vincent Carey

Last active: Nov 22, 2014
5 msgs
Vincent Carey Trouble with loading R Packages from source control Nov 4, 2014 Vincent Carey bioc pkgs depending on packages that are only in github? Nov 8, 2014 Vincent Carey PPA with built bioconductor packages (for continuous integration) Nov 10, 2014 Vincent Carey BiocParallel-devel error Nov 20, 2014 Vincent Carey faster gene id conversion? Nov 22, 2014

Vladislav Petyuk

Last active: Nov 18, 2014
1 msg
Vladislav Petyuk proteomics/MS generic Nov 18, 2014

Wei Shi

Last active: Nov 18, 2014
1 msg
Wei Shi Experimental data package 'seqc' Nov 18, 2014

Wolfgang Huber

Last active: Nov 26, 2014
3 msgs
Wolfgang Huber rhdf5 help Nov 1, 2014 Wolfgang Huber plotPCA for BiocGenerics Nov 2, 2014 Wolfgang Huber SummarizedExperiment vs ExpressionSet Nov 26, 2014