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Bioc-devel March 2015

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Aaron Lun

Last active: Mar 5, 2015
1 msg
Aaron Lun requirement for named assays in SummarizedExperiment Mar 5, 2015

Andrzej Oleś

Last active: Mar 16, 2015
1 msg
Andrzej Oleś No vignette contents page/fig refs with Devtools build Mar 16, 2015

Antti Honkela

Last active: Mar 30, 2015
1 msg
Antti Honkela CfP: ICML 2015 Workshop on Machine Learning Open Source Software: Open Ecosystems Mar 30, 2015

Arora, Sonali

Last active: Mar 20, 2015
2 msgs
Arora, Sonali Deadline for new package submissions - March 27, 2015 Mar 9, 2015 Arora, Sonali Reminder: Deadline for new package submissions - March 27, 2015 Mar 20, 2015

Bernat Gel

Last active: Mar 20, 2015
1 msg
Bernat Gel Error on Windows when selecting a single chromosome from a BSgenome Mar 20, 2015

Byungkuk Min

Last active: Mar 25, 2015
1 msg
Byungkuk Min request to create BSgenome Bos_taurus_UMD3.1.1 Mar 25, 2015

Charles Determan Jr

Last active: Mar 13, 2015
2 msgs
Charles Determan Jr Submitting a new package Mar 13, 2015 Charles Determan Jr Submitting a new package Mar 13, 2015

Dan Tenenbaum

Last active: Mar 27, 2015
24 msgs
Dan Tenenbaum CRAN package with Bioconductor dependencies Mar 4, 2015 Dan Tenenbaum Advice (was Re: CRAN package with Bioconductor dependencies) Mar 4, 2015 Dan Tenenbaum system maintenance / downtime Wed March 11 Mar 9, 2015 Dan Tenenbaum Strange warning message on build server "moscato2" Mar 11, 2015 Dan Tenenbaum New Windows toolchain Mar 12, 2015 Dan Tenenbaum New Windows toolchain Mar 12, 2015 Dan Tenenbaum Submitting a new package Mar 13, 2015 Dan Tenenbaum Submitting a new package Mar 13, 2015 Dan Tenenbaum testthat instructions for website Mar 13, 2015 Dan Tenenbaum testthat instructions for website Mar 13, 2015 Dan Tenenbaum No vignette contents page/fig refs with Devtools build Mar 16, 2015 Dan Tenenbaum developer profiles on bioconductor.org Mar 16, 2015 Dan Tenenbaum Bioconductor 3.1 release schedule now available Mar 16, 2015 Dan Tenenbaum FEM package updation build frequence Mar 17, 2015 Dan Tenenbaum FEM package updation build frequence Mar 17, 2015 Dan Tenenbaum New Windows toolchain Mar 18, 2015 Dan Tenenbaum How to remove warnings when load BiocGenerics, AnnotationDbi and GenomeInfoDb Mar 20, 2015 Dan Tenenbaum Mavericks "Not Supported" message Mar 20, 2015 Dan Tenenbaum Error on Windows when selecting a single chromosome from a BSgenome Mar 20, 2015 Dan Tenenbaum development vs release version Mar 22, 2015 Dan Tenenbaum Short URLs for packages? Mar 23, 2015 Dan Tenenbaum Rtools warning on tracker page Mar 24, 2015 Dan Tenenbaum "forceAndCall" is not a SPECIAL function ERROR when using ShortRead readAligned function Mar 27, 2015 Dan Tenenbaum "forceAndCall" is not a SPECIAL function ERROR when using ShortRead readAligned function Mar 27, 2015

Dario Strbenac

Last active: Mar 26, 2015
1 msg
Dario Strbenac new package: canceR Mar 26, 2015

Djork-Arné Clevert

Last active: Mar 16, 2015
1 msg
Djork-Arné Clevert CAMDA 2015 Mar 16, 2015

Eric Frichot

Last active: Mar 22, 2015
2 msgs
Eric Frichot development vs release version Mar 22, 2015 Eric Frichot development vs release version Mar 22, 2015

Fischer, Bernd

Last active: Mar 24, 2015
2 msgs
Fischer, Bernd Short URLs for packages? Mar 23, 2015 Fischer, Bernd Short URLs for packages? Mar 24, 2015

Gabriel Becker

Last active: Mar 24, 2015
8 msgs
Gabriel Becker CRAN package with Bioconductor dependencies Mar 2, 2015 Gabriel Becker Changes to the SummarizedExperiment Class Mar 3, 2015 Gabriel Becker development vs release version Mar 22, 2015 Gabriel Becker Short URLs for packages? Mar 23, 2015 Gabriel Becker Short URLs for packages? Mar 23, 2015 Gabriel Becker Short URLs for packages? Mar 23, 2015 Gabriel Becker doi (was Re: Short URLs for packages?) Mar 23, 2015 Gabriel Becker Short URLs for packages? Mar 24, 2015

Glyn Bradley

Last active: Mar 24, 2015
1 msg
Glyn Bradley Rtools warning on tracker page Mar 24, 2015

Gordon Brown

Last active: Mar 5, 2015
3 msgs
Gordon Brown CRAN package with Bioconductor dependencies Mar 4, 2015 Gordon Brown CRAN package with Bioconductor dependencies Mar 4, 2015 Gordon Brown CRAN package with Bioconductor dependencies Mar 5, 2015

Hector Corrada Bravo

Last active: Mar 4, 2015
1 msg
Hector Corrada Bravo Changes to the SummarizedExperiment Class Mar 4, 2015

Henrik Bengtsson

Last active: Mar 10, 2015
4 msgs
Henrik Bengtsson CRAN package with Bioconductor dependencies Mar 2, 2015 Henrik Bengtsson CRAN package with Bioconductor dependencies Mar 4, 2015 Henrik Bengtsson New(ish!) Seattle Bioconductor team member Mar 4, 2015 Henrik Bengtsson using devel bug Mar 10, 2015

Hervé Pagès

Last active: Mar 30, 2015
15 msgs
Hervé Pagès CRAN package with Bioconductor dependencies Mar 2, 2015 Hervé Pagès Changes to the SummarizedExperiment Class Mar 3, 2015 Hervé Pagès Changes to the SummarizedExperiment Class Mar 4, 2015 Hervé Pagès CRAN package with Bioconductor dependencies Mar 4, 2015 Hervé Pagès Package build error for windows system Mar 10, 2015 Hervé Pagès Submitting a new package Mar 13, 2015 Hervé Pagès zero-width ranges representing insertions Mar 16, 2015 Hervé Pagès 2 candidates for BiocGenerics Mar 16, 2015 Hervé Pagès zero-width ranges representing insertions Mar 16, 2015 Hervé Pagès zero-width ranges representing insertions Mar 16, 2015 Hervé Pagès zero-width ranges representing insertions Mar 17, 2015 Hervé Pagès 2 candidates for BiocGenerics Mar 24, 2015 Hervé Pagès request to create BSgenome Bos_taurus_UMD3.1.1 Mar 26, 2015 Hervé Pagès request to create BSgenome Bos_taurus_UMD3.1.1 Mar 27, 2015 Hervé Pagès request to create BSgenome Bos_taurus_UMD3.1.1 Mar 30, 2015

Islam Tolan

Last active: Mar 17, 2015
1 msg
Islam Tolan Contents of Bioc-devel digest Mar 17, 2015

Jesper Gådin

Last active: Mar 30, 2015
1 msg
Jesper Gådin SummarizedExperiment subset of 4 dimensions Mar 30, 2015

Jiang, Yuchao

Last active: Mar 7, 2015
2 msgs
Jiang, Yuchao SVN commit errors Mar 7, 2015 Jiang, Yuchao SVN commit errors Mar 7, 2015

Jim Hester

Last active: Mar 6, 2015
2 msgs
Jim Hester Changes to the SummarizedExperiment Class Mar 3, 2015 Jim Hester New(ish!) Seattle Bioconductor team member Mar 6, 2015

Karim Mezhoud

Last active: Mar 26, 2015
1 msg
Karim Mezhoud new package: canceR Mar 26, 2015

Kasper Daniel Hansen

Last active: Mar 24, 2015
9 msgs
Kasper Daniel Hansen Changes to the SummarizedExperiment Class Mar 9, 2015 Kasper Daniel Hansen Changes to the SummarizedExperiment Class Mar 9, 2015 Kasper Daniel Hansen using devel bug Mar 10, 2015 Kasper Daniel Hansen using devel bug Mar 10, 2015 Kasper Daniel Hansen using devel bug Mar 10, 2015 Kasper Daniel Hansen requirement for named assays in SummarizedExperiment Mar 12, 2015 Kasper Daniel Hansen zero-width ranges representing insertions Mar 16, 2015 Kasper Daniel Hansen Bioconductor 3.1 release schedule now available Mar 16, 2015 Kasper Daniel Hansen Short URLs for packages? Mar 24, 2015

Katie Planey

Last active: Mar 30, 2015
1 msg
Katie Planey appropriate S4 class to contain microarray OR clinical feature data for clustering Mar 30, 2015

Kevin Coombes

Last active: Mar 4, 2015
1 msg
Kevin Coombes Advice (was Re: CRAN package with Bioconductor dependencies) Mar 4, 2015

Kevin Rue-Albrecht

Last active: Mar 23, 2015
1 msg
Kevin Rue-Albrecht development vs release version Mar 23, 2015

Laurent Gatto

Last active: Mar 23, 2015
7 msgs
Laurent Gatto CRAN package with Bioconductor dependencies Mar 2, 2015 Laurent Gatto CRAN package with Bioconductor dependencies Mar 2, 2015 Laurent Gatto CRAN package with Bioconductor dependencies Mar 4, 2015 Laurent Gatto 2 candidates for BiocGenerics Mar 10, 2015 Laurent Gatto 2 candidates for BiocGenerics Mar 19, 2015 Laurent Gatto development vs release version Mar 23, 2015 Laurent Gatto Short URLs for packages? Mar 23, 2015

Leonardo Collado Torres

Last active: Mar 12, 2015
2 msgs
Leonardo Collado Torres New(ish!) Seattle Bioconductor team member Mar 6, 2015 Leonardo Collado Torres BiocParallel: changes to SnowParam(), should it import futile.logger? Mar 12, 2015

Levi Waldron

Last active: Mar 16, 2015
1 msg
Levi Waldron developer profiles on bioconductor.org Mar 16, 2015

Marc Carlson

Last active: Mar 19, 2015
3 msgs
Marc Carlson keys function of org.Pf.plasmo.db gives an error. Mar 18, 2015 Marc Carlson keys function of org.Pf.plasmo.db gives an error. Mar 18, 2015 Marc Carlson Feature Request--add host and port to makeTxDbPackageFromBiomart Mar 19, 2015

Martin Morgan

Last active: Mar 30, 2015
15 msgs
Martin Morgan CRAN package with Bioconductor dependencies Mar 2, 2015 Martin Morgan CRAN package with Bioconductor dependencies Mar 2, 2015 Martin Morgan Changes to the SummarizedExperiment Class Mar 4, 2015 Martin Morgan New(ish!) Seattle Bioconductor team member Mar 4, 2015 Martin Morgan Changes to the SummarizedExperiment Class Mar 9, 2015 Martin Morgan Changes to the SummarizedExperiment Class Mar 9, 2015 Martin Morgan Changes to the SummarizedExperiment Class Mar 9, 2015 Martin Morgan using devel bug Mar 10, 2015 Martin Morgan using devel bug Mar 10, 2015 Martin Morgan requirement for named assays in SummarizedExperiment Mar 12, 2015 Martin Morgan Linking to Rsamtools does not work on latest R-devel Mar 20, 2015 Martin Morgan doi (was Re: Short URLs for packages?) Mar 23, 2015 Martin Morgan Short URLs for packages? Mar 24, 2015 Martin Morgan ShortReadQ class and memory usage Mar 30, 2015 Martin Morgan "forceAndCall" is not a SPECIAL function ERROR when using ShortRead readAligned function Mar 30, 2015

Martin, Tiphaine

Last active: Mar 23, 2015
3 msgs
Martin, Tiphaine Bioconductor 3.1 release schedule now available Mar 16, 2015 Martin, Tiphaine Bioconductor 3.1 release schedule now available Mar 17, 2015 Martin, Tiphaine New package: coMET Mar 23, 2015

Michael Lawrence

Last active: Mar 31, 2015
9 msgs
Michael Lawrence Changes to the SummarizedExperiment Class Mar 3, 2015 Michael Lawrence Changes to the SummarizedExperiment Class Mar 3, 2015 Michael Lawrence Changes to the SummarizedExperiment Class Mar 4, 2015 Michael Lawrence New(ish!) Seattle Bioconductor team member Mar 4, 2015 Michael Lawrence testthat instructions for website Mar 13, 2015 Michael Lawrence zero-width ranges representing insertions Mar 16, 2015 Michael Lawrence zero-width ranges representing insertions Mar 16, 2015 Michael Lawrence SummarizedExperiment subset of 4 dimensions Mar 31, 2015 Michael Lawrence SummarizedExperiment subset of 4 dimensions Mar 31, 2015

Michael Love

Last active: Mar 31, 2015
8 msgs
Michael Love Changes to the SummarizedExperiment Class Mar 6, 2015 Michael Love Changes to the SummarizedExperiment Class Mar 9, 2015 Michael Love Changes to the SummarizedExperiment Class Mar 9, 2015 Michael Love testthat instructions for website Mar 13, 2015 Michael Love testthat instructions for website Mar 13, 2015 Michael Love Changes to the SummarizedExperiment Class Mar 31, 2015 Michael Love Changes to the SummarizedExperiment Class Mar 31, 2015 Michael Love Changes to the SummarizedExperiment Class Mar 31, 2015

Mike Smith

Last active: Mar 30, 2015
1 msg
Mike Smith ShortReadQ class and memory usage Mar 30, 2015

Moritz Gerstung

Last active: Mar 9, 2015
1 msg
Moritz Gerstung Announcing availability of Rhtslib package Mar 9, 2015

Nathaniel Hayden

Last active: Mar 20, 2015
8 msgs
Nathaniel Hayden Announcing availability of Rhtslib package Mar 9, 2015 Nathaniel Hayden Announcing availability of Rhtslib package Mar 9, 2015 Nathaniel Hayden Announcing availability of Rhtslib package Mar 9, 2015 Nathaniel Hayden Linking to Rsamtools does not work on latest R-devel Mar 19, 2015 Nathaniel Hayden Linking to Rsamtools does not work on latest R-devel Mar 19, 2015 Nathaniel Hayden Linking to Rsamtools does not work on latest R-devel Mar 20, 2015 Nathaniel Hayden Linking to Rsamtools does not work on latest R-devel Mar 20, 2015 Nathaniel Hayden Linking to Rsamtools does not work on latest R-devel Mar 20, 2015

Nicolas Delhomme

Last active: Mar 30, 2015
6 msgs
Nicolas Delhomme ShortRead srdistance is broken Mar 16, 2015 Nicolas Delhomme ShortRead srdistance is broken Mar 16, 2015 Nicolas Delhomme "forceAndCall" is not a SPECIAL function ERROR when using ShortRead readAligned function Mar 27, 2015 Nicolas Delhomme "forceAndCall" is not a SPECIAL function ERROR when using ShortRead readAligned function Mar 27, 2015 Nicolas Delhomme "forceAndCall" is not a SPECIAL function ERROR when using ShortRead readAligned function Mar 27, 2015 Nicolas Delhomme "forceAndCall" is not a SPECIAL function ERROR when using ShortRead readAligned function Mar 30, 2015

Ou, Jianhong

Last active: Mar 19, 2015
1 msg
Ou, Jianhong How to remove warnings when load BiocGenerics, AnnotationDbi and GenomeInfoDb Mar 19, 2015

Paolo Martini

Last active: Mar 18, 2015
1 msg
Paolo Martini keys function of org.Pf.plasmo.db gives an error. Mar 18, 2015

Pau Bellot Pujalte

Last active: Mar 17, 2015
1 msg
Pau Bellot Pujalte New netbenchmark package Mar 17, 2015

Peter Haverty

Last active: Mar 4, 2015
5 msgs
Peter Haverty Changes to the SummarizedExperiment Class Mar 3, 2015 Peter Haverty Changes to the SummarizedExperiment Class Mar 3, 2015 Peter Haverty Changes to the SummarizedExperiment Class Mar 3, 2015 Peter Haverty Changes to the SummarizedExperiment Class Mar 4, 2015 Peter Haverty Changes to the SummarizedExperiment Class Mar 4, 2015

Rainer Johannes

Last active: Mar 30, 2015
2 msgs
Rainer Johannes Strange warning message on build server "moscato2" Mar 11, 2015 Rainer Johannes ensembldb: Ensembl based annotation packages Mar 30, 2015

Robert Castelo

Last active: Mar 17, 2015
7 msgs
Robert Castelo Changes to the SummarizedExperiment Class Mar 4, 2015 Robert Castelo zero-width ranges representing insertions Mar 16, 2015 Robert Castelo zero-width ranges representing insertions Mar 16, 2015 Robert Castelo little tiny bug in CDSID annotations from predictCoding() Mar 17, 2015 Robert Castelo little tiny bug in CDSID annotations from predictCoding() Mar 17, 2015 Robert Castelo little tiny bug in CDSID annotations from predictCoding() Mar 17, 2015 Robert Castelo little tiny bug in CDSID annotations from predictCoding() Mar 17, 2015

Ryan

Last active: Mar 12, 2015
2 msgs
Ryan CRAN package with Bioconductor dependencies Mar 2, 2015 Ryan requirement for named assays in SummarizedExperiment Mar 12, 2015

Sean Davis

Last active: Mar 23, 2015
1 msg
Sean Davis Short URLs for packages? Mar 23, 2015

Steve Lianoglou

Last active: Mar 11, 2015
1 msg
Steve Lianoglou New(ish!) Seattle Bioconductor team member Mar 11, 2015

Steven Barrett

Last active: Mar 16, 2015
1 msg
Steven Barrett No vignette contents page/fig refs with Devtools build Mar 16, 2015

Tim Triche, Jr.

Last active: Mar 26, 2015
13 msgs
Tim Triche, Jr. Changes to the SummarizedExperiment Class Mar 3, 2015 Tim Triche, Jr. Changes to the SummarizedExperiment Class Mar 4, 2015 Tim Triche, Jr. Changes to the SummarizedExperiment Class Mar 4, 2015 Tim Triche, Jr. Changes to the SummarizedExperiment Class Mar 4, 2015 Tim Triche, Jr. Changes to the SummarizedExperiment Class Mar 4, 2015 Tim Triche, Jr. requirement for named assays in SummarizedExperiment Mar 12, 2015 Tim Triche, Jr. requirement for named assays in SummarizedExperiment Mar 12, 2015 Tim Triche, Jr. Short URLs for packages? Mar 23, 2015 Tim Triche, Jr. Short URLs for packages? Mar 23, 2015 Tim Triche, Jr. Short URLs for packages? Mar 23, 2015 Tim Triche, Jr. Short URLs for packages? Mar 23, 2015 Tim Triche, Jr. Short URLs for packages? Mar 24, 2015 Tim Triche, Jr. new package: canceR Mar 26, 2015

Ulrich Bodenhofer

Last active: Mar 23, 2015
7 msgs
Ulrich Bodenhofer Linking to Rsamtools does not work on latest R-devel Mar 19, 2015 Ulrich Bodenhofer Linking to Rsamtools does not work on latest R-devel Mar 20, 2015 Ulrich Bodenhofer Linking to Rsamtools does not work on latest R-devel Mar 20, 2015 Ulrich Bodenhofer Linking to Rsamtools does not work on latest R-devel Mar 20, 2015 Ulrich Bodenhofer Linking to Rsamtools does not work on latest R-devel Mar 20, 2015 Ulrich Bodenhofer Linking to Rsamtools does not work on latest R-devel Mar 20, 2015 Ulrich Bodenhofer Linking to Rsamtools does not work on latest R-devel Mar 23, 2015

Valerie Obenchain

Last active: Mar 19, 2015
9 msgs
Valerie Obenchain Changes to the SummarizedExperiment Class Mar 6, 2015 Valerie Obenchain requirement for named assays in SummarizedExperiment Mar 6, 2015 Valerie Obenchain requirement for named assays in SummarizedExperiment Mar 11, 2015 Valerie Obenchain BiocParallel: changes to SnowParam(), should it import futile.logger? Mar 15, 2015 Valerie Obenchain ShortRead srdistance is broken Mar 16, 2015 Valerie Obenchain zero-width ranges representing insertions Mar 16, 2015 Valerie Obenchain little tiny bug in CDSID annotations from predictCoding() Mar 17, 2015 Valerie Obenchain little tiny bug in CDSID annotations from predictCoding() Mar 17, 2015 Valerie Obenchain zero-width ranges representing insertions Mar 19, 2015

Vincent Carey

Last active: Mar 30, 2015
10 msgs
Vincent Carey Changes to the SummarizedExperiment Class Mar 4, 2015 Vincent Carey Changes to the SummarizedExperiment Class Mar 4, 2015 Vincent Carey Advice (was Re: CRAN package with Bioconductor dependencies) Mar 4, 2015 Vincent Carey New(ish!) Seattle Bioconductor team member Mar 5, 2015 Vincent Carey Changes to the SummarizedExperiment Class Mar 9, 2015 Vincent Carey using devel bug Mar 10, 2015 Vincent Carey development vs release version Mar 22, 2015 Vincent Carey development vs release version Mar 22, 2015 Vincent Carey development vs release version Mar 22, 2015 Vincent Carey appropriate S4 class to contain microarray OR clinical feature data for clustering Mar 30, 2015

Vladislav Petyuk

Last active: Mar 20, 2015
1 msg
Vladislav Petyuk Mavericks "Not Supported" message Mar 20, 2015

Wolfgang Huber

Last active: Mar 31, 2015
5 msgs
Wolfgang Huber Short URLs for packages? Mar 23, 2015 Wolfgang Huber Short URLs for packages? Mar 24, 2015 Wolfgang Huber Short URLs for packages? Mar 24, 2015 Wolfgang Huber SummarizedExperiment subset of 4 dimensions Mar 31, 2015 Wolfgang Huber SummarizedExperiment subset of 4 dimensions Mar 31, 2015

Yinming Jiao

Last active: Mar 17, 2015
2 msgs
Yinming Jiao FEM package updation build frequence Mar 17, 2015 Yinming Jiao FEM package updation build frequence Mar 17, 2015

rcaloger

Last active: Mar 8, 2015
1 msg
rcaloger Warning in Chimera Package: .onLoad failed in loadNamespace() for 'Homo.sapiens' Mar 8, 2015