Bioc-devel - November 2015 - Thread View

[Bioc-devel] ncdf deprecation

1 msg Nov 30

Stephanie M. Gogarten ncdf deprecation Nov 30, 2015

[Bioc-devel] fix build error

1 msg Nov 30

Aitor GONZALEZ fix build error Nov 30, 2015

[Bioc-devel] fix build error

2 msgs Nov 30

Aitor GONZALEZ fix build error Nov 30, 2015

Brian Long fix build error Nov 30, 2015

[Bioc-devel] Bioc twitter bot is on repeat

6 msgs Nov 24

Michael Love Bioc twitter bot is on repeat Nov 24, 2015

Jim Hester Bioc twitter bot is on repeat Nov 24, 2015

Robert M. Flight Bioc twitter bot is on repeat Nov 24, 2015

Martin Morgan Bioc twitter bot is on repeat Nov 24, 2015

Robert M. Flight Bioc twitter bot is on repeat Nov 24, 2015

Martin Morgan Bioc twitter bot is on repeat Nov 24, 2015

[Bioc-devel] PANTHER.db GOSLIM_ID hosed?

5 msgs Nov 24

Steve Lianoglou PANTHER.db GOSLIM_ID hosed? Nov 20, 2015

Martin Morgan PANTHER.db GOSLIM_ID hosed? Nov 20, 2015

Julius Müller PANTHER.db GOSLIM_ID hosed? Nov 20, 2015

Jim Hester PANTHER.db GOSLIM_ID hosed? Nov 23, 2015

Steve Lianoglou PANTHER.db GOSLIM_ID hosed? Nov 24, 2015

[Bioc-devel] Coverage test badge not updating

3 msgs Nov 23

Leonardo Collado Torres Coverage test badge not updating Nov 17, 2015

Jim Hester Coverage test badge not updating Nov 20, 2015

Leonardo Collado Torres Coverage test badge not updating Nov 23, 2015

[Bioc-devel] Behavior of select function in AnnotationDbi

7 msgs Nov 23

Hervé Pagès Behavior of select function in AnnotationDbi Nov 20, 2015

James W. MacDonald Behavior of select function in AnnotationDbi Nov 21, 2015

Hervé Pagès Behavior of select function in AnnotationDbi Nov 22, 2015

James W. MacDonald Behavior of select function in AnnotationDbi Nov 23, 2015

Martin Morgan Behavior of select function in AnnotationDbi Nov 23, 2015

Vincent Carey Behavior of select function in AnnotationDbi Nov 23, 2015

[Bioc-devel] Is there a way to change the name of R package that is already published on bioconductor?

4 msgs Nov 22

Hervé Pagès Is there a way to change the name of R package that is already published on bioconductor? Nov 16, 2015

Dario Strbenac Is there a way to change the name of R package that is already published on bioconductor? Nov 16, 2015

Marcin Kosiński Is there a way to change the name of R package that is already published on bioconductor? Nov 22, 2015

Martin Morgan Is there a way to change the name of R package that is already published on bioconductor? Nov 22, 2015

[Bioc-devel] Behavior of select function in AnnotationDbi

2 msgs Nov 20

James W. MacDonald Behavior of select function in AnnotationDbi Nov 20, 2015

Martin Morgan Behavior of select function in AnnotationDbi Nov 20, 2015

[Bioc-devel] remove history vignettes

7 msgs Nov 19

顾祖光 remove history vignettes Nov 17, 2015

Gabriel Becker remove history vignettes Nov 17, 2015

顾祖光 remove history vignettes Nov 17, 2015

Gabriel Becker remove history vignettes Nov 17, 2015

Leonardo Collado Torres remove history vignettes Nov 17, 2015

Brian Long remove history vignettes Nov 19, 2015

顾祖光 remove history vignettes Nov 19, 2015

[Bioc-devel] Unexpected behaviour with Assays and Vector classes

3 msgs Nov 18

Hervé Pagès Unexpected behaviour with Assays and Vector classes Nov 16, 2015

Hervé Pagès Unexpected behaviour with Assays and Vector classes Nov 18, 2015

[Bioc-devel] A bioconductor package archive?

1 msg Nov 18

Hervé Pagès A bioconductor package archive? Nov 18, 2015

[Bioc-devel] Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1

1 msg Nov 18

Ludwig Geistlinger Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1 Nov 18, 2015

[Bioc-devel] A bioconductor package archive?

1 msg Nov 18

Gabriel Becker A bioconductor package archive? Nov 18, 2015

[Bioc-devel] Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1

7 msgs Nov 18

Ludwig Geistlinger Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1 Nov 18, 2015

Martin Morgan Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1 Nov 18, 2015

Rainer Johannes Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1 Nov 18, 2015

Ludwig Geistlinger Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1 Nov 18, 2015

Rainer Johannes Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1 Nov 18, 2015

Henrik Bengtsson Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1 Nov 18, 2015

Martin Morgan Troubles using R/Bioc-devel with Mac OS X El Capitan 10.11.1 Nov 18, 2015

[Bioc-devel] Package Submission

1 msg Nov 17

ZHANG Yu Package Submission Nov 17, 2015

[Bioc-devel] Is there a way to change the name of R package that is already published on bioconductor?

1 msg Nov 16

Marcin Kosiński Is there a way to change the name of R package that is already published on bioconductor? Nov 16, 2015

[Bioc-devel] Base class for interaction data - expressions of interest

2 msgs Nov 16

Aaron Lun Base class for interaction data - expressions of interest Nov 16, 2015

[Bioc-devel] Base class for interaction data - expressions of interest

11 msgs Nov 16

Aaron Lun Base class for interaction data - expressions of interest Nov 5, 2015

Martin Morgan Base class for interaction data - expressions of interest Nov 7, 2015

Ludwig Geistlinger Base class for interaction data - expressions of interest Nov 7, 2015

Tim Triche, Jr. Base class for interaction data - expressions of interest Nov 7, 2015

Laurent Gatto Base class for interaction data - expressions of interest Nov 8, 2015

Aaron Lun Base class for interaction data - expressions of interest Nov 8, 2015

Vincent Carey Base class for interaction data - expressions of interest Nov 8, 2015

Aaron Lun Base class for interaction data - expressions of interest Nov 8, 2015

Malcolm Perry Base class for interaction data - expressions of interest Nov 10, 2015

Aaron Lun Base class for interaction data - expressions of interest Nov 16, 2015

[Bioc-devel] Unexpected behaviour with Assays and Vector classes

2 msgs Nov 15

Hervé Pagès Unexpected behaviour with Assays and Vector classes Nov 15, 2015

Aaron Lun Unexpected behaviour with Assays and Vector classes Nov 15, 2015

[Bioc-devel] Unexpected behaviour with Assays and Vector classes

1 msg Nov 15

Aaron Lun Unexpected behaviour with Assays and Vector classes Nov 15, 2015

[Bioc-devel] Access check.log file after error

1 msg Nov 11

Hervé Pagès Access check.log file after error Nov 11, 2015

[Bioc-devel] Access check.log file after error

1 msg Nov 11

Blattmann Peter Access check.log file after error Nov 11, 2015

[Bioc-devel] Access check.log file after error

1 msg Nov 11

Brian Long Access check.log file after error Nov 11, 2015

[Bioc-devel] Access check.log file after error

1 msg Nov 11

Brian Long Access check.log file after error Nov 11, 2015

[Bioc-devel] Access check.log file after error

2 msgs Nov 11

Blattmann Peter Access check.log file after error Nov 11, 2015

James W. MacDonald Access check.log file after error Nov 11, 2015

[Bioc-devel] Gviz: implementing support for FaFiles from AnnotationHub

5 msgs Nov 9

Rainer Johannes Gviz: implementing support for FaFiles from AnnotationHub Nov 9, 2015

Hahne, Florian Gviz: implementing support for FaFiles from AnnotationHub Nov 9, 2015

Rainer Johannes Gviz: implementing support for FaFiles from AnnotationHub Nov 9, 2015

Martin Morgan Gviz: implementing support for FaFiles from AnnotationHub Nov 9, 2015

Rainer Johannes Gviz: implementing support for FaFiles from AnnotationHub Nov 9, 2015

[Bioc-devel] error in stable AnnotationHub

1 msg Nov 6

Obenchain, Valerie error in stable AnnotationHub Nov 6, 2015

[Bioc-devel] Moving from MakeOrganismPackage to AnnotationHub recipes

2 msgs Nov 6

Keith Hughitt Moving from MakeOrganismPackage to AnnotationHub recipes Nov 5, 2015

Obenchain, Valerie Moving from MakeOrganismPackage to AnnotationHub recipes Nov 6, 2015

[Bioc-devel] citation() error for BiocParallel and S4Vectors

3 msgs Nov 6

Leonardo Collado Torres citation() error for BiocParallel and S4Vectors Nov 3, 2015

Martin Morgan citation() error for BiocParallel and S4Vectors Nov 3, 2015

Martin Morgan citation() error for BiocParallel and S4Vectors Nov 6, 2015

[Bioc-devel] Reducing memory footprint of large object

3 msgs Nov 5

Christian Arnold Reducing memory footprint of large object Nov 5, 2015

Fischer, Bernd Reducing memory footprint of large object Nov 5, 2015

Stephanie M. Gogarten Reducing memory footprint of large object Nov 5, 2015

[Bioc-devel] Gviz: GeneRegionTrack from EnsDb objects

2 msgs Nov 4

Rainer Johannes Gviz: GeneRegionTrack from EnsDb objects Nov 4, 2015

Hahne, Florian Gviz: GeneRegionTrack from EnsDb objects Nov 4, 2015

[Bioc-devel] commit fail in devel branch

2 msgs Nov 3

Dan Tenenbaum commit fail in devel branch Nov 3, 2015

Yu, Guangchuang commit fail in devel branch Nov 3, 2015

[Bioc-devel] commit fail in devel branch

1 msg Nov 3

Yu, Guangchuang commit fail in devel branch Nov 3, 2015

[Bioc-devel] AnnotationHub downtime Wed 11/4

1 msg Nov 3

Dan Tenenbaum AnnotationHub downtime Wed 11/4 Nov 3, 2015

[Bioc-devel] BiocStyle::doc_date() not found when testing on Travis via metacran/r-builder

4 msgs Nov 3

Leonardo Collado Torres BiocStyle::doc_date() not found when testing on Travis via metacran/r-builder Nov 2, 2015

Andrzej Oleś BiocStyle::doc_date() not found when testing on Travis via metacran/r-builder Nov 3, 2015

Leonardo Collado Torres BiocStyle::doc_date() not found when testing on Travis via metacran/r-builder Nov 3, 2015

[Bioc-devel] Idea for improved visibility of Bioconductor packages

2 msgs Nov 3

Dan Tenenbaum Idea for improved visibility of Bioconductor packages Nov 2, 2015

Andrzej Oleś Idea for improved visibility of Bioconductor packages Nov 3, 2015

[Bioc-devel] is.unsorted method for GRanges objects

11 msgs Nov 3

Peter Hickey is.unsorted method for GRanges objects Nov 2, 2015

Gabriel Becker is.unsorted method for GRanges objects Nov 2, 2015

Michael Lawrence is.unsorted method for GRanges objects Nov 2, 2015

Peter Haverty is.unsorted method for GRanges objects Nov 2, 2015

Hervé Pagès is.unsorted method for GRanges objects Nov 2, 2015

Michael Lawrence is.unsorted method for GRanges objects Nov 2, 2015

Peter Hickey is.unsorted method for GRanges objects Nov 2, 2015

Hervé Pagès is.unsorted method for GRanges objects Nov 2, 2015

Michael Lawrence is.unsorted method for GRanges objects Nov 3, 2015

Peter Hickey is.unsorted method for GRanges objects Nov 3, 2015

Michael Lawrence is.unsorted method for GRanges objects Nov 3, 2015

[Bioc-devel] FW: [bioc] A: CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for

1 msg Nov 2

Zhu, Lihua (Julie) A: CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for Nov 2, 2015

Bioc-devel November 2015