Bioc-devel January 2017

[Bioc-devel] error from biocLite on OSX with R-devel / Bioc-devel

9 msgs Jan 31

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Levi Waldron error from biocLite on OSX with R-devel / Bioc-devel Jan 29, 2017

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Martin Morgan error from biocLite on OSX with R-devel / Bioc-devel Jan 29, 2017

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Levi Waldron error from biocLite on OSX with R-devel / Bioc-devel Jan 29, 2017

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Martin Morgan error from biocLite on OSX with R-devel / Bioc-devel Jan 29, 2017

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Levi Waldron error from biocLite on OSX with R-devel / Bioc-devel Jan 30, 2017

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Vincent Carey error from biocLite on OSX with R-devel / Bioc-devel Jan 30, 2017

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Levi Waldron error from biocLite on OSX with R-devel / Bioc-devel Jan 30, 2017

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Martin Morgan error from biocLite on OSX with R-devel / Bioc-devel Jan 30, 2017

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Vincent Carey error from biocLite on OSX with R-devel / Bioc-devel Jan 31, 2017

[Bioc-devel] GenomeInfoDb::fetchExtendedChromInfoFromUCSC broken again?

2 msgs Jan 31

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Christian Arnold GenomeInfoDb::fetchExtendedChromInfoFromUCSC broken again? Jan 31, 2017

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Martin Morgan GenomeInfoDb::fetchExtendedChromInfoFromUCSC broken again? Jan 31, 2017

[Bioc-devel] GenomicFeatures::makeTxDbFromGFF leads to a S4Vectors error

2 msgs Jan 30

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Hervé Pagès GenomicFeatures::makeTxDbFromGFF leads to a S4Vectors error Jan 30, 2017

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Leonardo Collado Torres GenomicFeatures::makeTxDbFromGFF leads to a S4Vectors error Jan 30, 2017

[Bioc-devel] tokay2: devel Windows builder

1 msg Jan 30

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Obenchain, Valerie tokay2: devel Windows builder Jan 30, 2017

[Bioc-devel] GenomicFeatures::makeTxDbFromGFF leads to a S4Vectors error

1 msg Jan 30

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Leonardo Collado Torres GenomicFeatures::makeTxDbFromGFF leads to a S4Vectors error Jan 30, 2017

[Bioc-devel] xps build problem on toluca2

5 msgs Jan 27

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cstrato xps build problem on toluca2 Jan 26, 2017

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Obenchain, Valerie xps build problem on toluca2 Jan 27, 2017

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cstrato xps build problem on toluca2 Jan 27, 2017

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Obenchain, Valerie xps build problem on toluca2 Jan 27, 2017

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cstrato xps build problem on toluca2 Jan 27, 2017

[Bioc-devel] Code quality and bug reports

6 msgs Jan 27

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Lluís Revilla Code quality and bug reports Jan 4, 2017

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Obenchain, Valerie Code quality and bug reports Jan 6, 2017

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Lluís Revilla Code quality and bug reports Jan 14, 2017

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Obenchain, Valerie Code quality and bug reports Jan 18, 2017

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Lluís Revilla Code quality and bug reports Jan 27, 2017

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Martin Morgan Code quality and bug reports Jan 27, 2017

[Bioc-devel] LOBSTAHS dev build failing on toluca2; version does not update in devel

7 msgs Jan 26

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James Collins LOBSTAHS dev build failing on toluca2; version does not update in devel Jan 26, 2017

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Kasper Daniel Hansen LOBSTAHS dev build failing on toluca2; version does not update in devel Jan 26, 2017

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James Collins LOBSTAHS dev build failing on toluca2; version does not update in devel Jan 26, 2017

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Kasper Daniel Hansen LOBSTAHS dev build failing on toluca2; version does not update in devel Jan 26, 2017

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Obenchain, Valerie LOBSTAHS dev build failing on toluca2; version does not update in devel Jan 26, 2017

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James Collins LOBSTAHS dev build failing on toluca2; version does not update in devel Jan 26, 2017

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Obenchain, Valerie LOBSTAHS dev build failing on toluca2; version does not update in devel Jan 26, 2017

[Bioc-devel] Recent changes in xcms

1 msg Jan 26

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Rainer Johannes Recent changes in xcms Jan 26, 2017

[Bioc-devel] rtracklayer

2 msgs Jan 26

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Kathleen Oros Klein rtracklayer Jan 26, 2017

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Michael Lawrence rtracklayer Jan 26, 2017

[Bioc-devel] plotPCA in affycoretools not working

2 msgs Jan 26

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Vojtech Kulvait plotPCA in affycoretools not working Jan 26, 2017

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James W. MacDonald plotPCA in affycoretools not working Jan 26, 2017

[Bioc-devel] Bioconductor package license: dependency on work under non-commercial license

3 msgs Jan 25

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Dan Tenenbaum Bioconductor package license: dependency on work under non-commercial license Jan 25, 2017

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Martin Morgan Bioconductor package license: dependency on work under non-commercial license Jan 25, 2017

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David J. H. Shih Bioconductor package license: dependency on work under non-commercial license Jan 25, 2017

[Bioc-devel] GenomeInfoDb::Seqinfo() failing with 404 error

2 msgs Jan 25

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Raymond Cavalcante GenomeInfoDb::Seqinfo() failing with 404 error Jan 25, 2017

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Obenchain, Valerie GenomeInfoDb::Seqinfo() failing with 404 error Jan 25, 2017

[Bioc-devel] Bioconductor package license: dependency on work under non-commercial license

1 msg Jan 25

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David J. H. Shih Bioconductor package license: dependency on work under non-commercial license Jan 25, 2017

[Bioc-devel] Naming and namespace collisions for commonly-named functions

4 msgs Jan 24

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Sean Davis Naming and namespace collisions for commonly-named functions Jan 24, 2017

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Vincent Carey Naming and namespace collisions for commonly-named functions Jan 24, 2017

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Martin Morgan Naming and namespace collisions for commonly-named functions Jan 24, 2017

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Henrik Bengtsson Naming and namespace collisions for commonly-named functions Jan 24, 2017

[Bioc-devel] Bioconductor core team scientific programmer and senior systems analyst jobs

1 msg Jan 24

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Martin Morgan Bioconductor core team scientific programmer and senior systems analyst jobs Jan 24, 2017

[Bioc-devel] GitHub mirror not synced for GenomicTuples

4 msgs Jan 22

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Peter Hickey GitHub mirror not synced for GenomicTuples Jan 22, 2017

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Peter Hickey GitHub mirror not synced for GenomicTuples Jan 22, 2017

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Martin Morgan GitHub mirror not synced for GenomicTuples Jan 22, 2017

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Peter Hickey GitHub mirror not synced for GenomicTuples Jan 22, 2017

[Bioc-devel] Dependency on devtools in biocLite()

5 msgs Jan 20

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Andrzej Oleś Dependency on devtools in biocLite() Jan 13, 2017

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Martin Morgan Dependency on devtools in biocLite() Jan 14, 2017

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Andrzej Oleś Dependency on devtools in biocLite() Jan 17, 2017

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Martin Morgan Dependency on devtools in biocLite() Jan 18, 2017

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Andrzej Oleś Dependency on devtools in biocLite() Jan 20, 2017

[Bioc-devel] Alternative Hypothesis Specification For edgeR

3 msgs Jan 18

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Dario Strbenac Alternative Hypothesis Specification For edgeR Jan 15, 2017

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Aaron Lun Alternative Hypothesis Specification For edgeR Jan 18, 2017

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Aaron Lun Alternative Hypothesis Specification For edgeR Jan 18, 2017

[Bioc-devel] readGAlignments Lacks strandMode

4 msgs Jan 14

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Dario Strbenac readGAlignments Lacks strandMode Jan 5, 2017

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Hervé Pagès readGAlignments Lacks strandMode Jan 13, 2017

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Hervé Pagès readGAlignments Lacks strandMode Jan 13, 2017

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Dario Strbenac readGAlignments Lacks strandMode Jan 14, 2017

[Bioc-devel] GAlignments Sorting Causes C Stack Error

2 msgs Jan 9

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Dario Strbenac GAlignments Sorting Causes C Stack Error Jan 8, 2017

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Hervé Pagès GAlignments Sorting Causes C Stack Error Jan 9, 2017

[Bioc-devel] R version-dependent segfault

5 msgs Jan 8

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Vladimir Kiselev R version-dependent segfault Jan 5, 2017

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Martin Morgan R version-dependent segfault Jan 5, 2017

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Vladimir Kiselev R version-dependent segfault Jan 5, 2017

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Martin Morgan R version-dependent segfault Jan 5, 2017

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Vladimir Kiselev R version-dependent segfault Jan 8, 2017

[Bioc-devel] report package issue to Bioconductor

3 msgs Jan 6

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Yu, Guangchuang report package issue to Bioconductor Jan 3, 2017

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Obenchain, Valerie report package issue to Bioconductor Jan 6, 2017

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Obenchain, Valerie report package issue to Bioconductor Jan 6, 2017

[Bioc-devel] asBam Default Destination

2 msgs Jan 6

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Dario Strbenac asBam Default Destination Jan 6, 2017

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Martin Morgan asBam Default Destination Jan 6, 2017

[Bioc-devel] maftools package not updated after pushing bug fixes.

6 msgs Jan 6

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Anand MT maftools package not updated after pushing bug fixes. Jan 5, 2017

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Vincent Carey maftools package not updated after pushing bug fixes. Jan 5, 2017

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Anand MT maftools package not updated after pushing bug fixes. Jan 5, 2017

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Vladimir Kiselev maftools package not updated after pushing bug fixes. Jan 5, 2017

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Anand MT maftools package not updated after pushing bug fixes. Jan 6, 2017

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Martin Morgan maftools package not updated after pushing bug fixes. Jan 6, 2017

[Bioc-devel] Updating package

6 msgs Jan 5

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Charles Determan Updating package Jan 4, 2017

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Charles Determan Updating package Jan 5, 2017

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Martin Morgan Updating package Jan 5, 2017

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Charles Determan Updating package Jan 5, 2017

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Charles Determan Updating package Jan 5, 2017

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Martin Morgan Updating package Jan 5, 2017

[Bioc-devel] update mzR to reflect new Rcpp (RE: https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue)

2 msgs Jan 5

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Dickey, Aaron update mzR to reflect new Rcpp (RE: https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue) Jan 5, 2017

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Laurent Gatto update mzR to reflect new Rcpp (RE: https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue) Jan 5, 2017

[Bioc-devel] Which platform are the vignettes built on?

3 msgs Jan 5

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Vladimir Kiselev Which platform are the vignettes built on? Jan 5, 2017

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Martin Morgan Which platform are the vignettes built on? Jan 5, 2017

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Vladimir Kiselev Which platform are the vignettes built on? Jan 5, 2017

[Bioc-devel] TabixFileList() constructor broken in devel

2 msgs Jan 5

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Martin Morgan TabixFileList() constructor broken in devel Jan 4, 2017

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Robert Castelo TabixFileList() constructor broken in devel Jan 5, 2017

[Bioc-devel] How to get further assessment for newly submitted package?

2 msgs Jan 4

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Jurat Shayidin How to get further assessment for newly submitted package? Jan 4, 2017

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Martin Morgan How to get further assessment for newly submitted package? Jan 4, 2017

[Bioc-devel] Problem pushing new versions of xcms via git svn dcommit

3 msgs Jan 3

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Neumann, Steffen Problem pushing new versions of xcms via git svn dcommit Jan 2, 2017

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Laurent Gatto Problem pushing new versions of xcms via git svn dcommit Jan 3, 2017

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Rainer Johannes Problem pushing new versions of xcms via git svn dcommit Jan 3, 2017

[Bioc-devel] Problem pushing new versions of xcms via git svn dcommit

1 msg Jan 3

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McDavid, Andrew Problem pushing new versions of xcms via git svn dcommit Jan 3, 2017

[Bioc-devel] proteomics workflow

1 msg Jan 1

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Laurent Gatto proteomics workflow Jan 1, 2017