Bioc-devel May 2017

=?utf-8?Q?What=E2=80=99s_?=new in epiviz?

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1 msg · May 16

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Hector Corrada Bravo =?utf-8?Q?What=E2=80=99s_?=new in epiviz? May 16, 2017

Applying bugfixes to both 3.5 release branch and devel branch

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2 msgs · May 8 – May 9

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Janssen-10, R.R.E. Applying bugfixes to both 3.5 release branch and devel branch May 8, 2017

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Martin Morgan Applying bugfixes to both 3.5 release branch and devel branch May 9, 2017

BiocCheck requires example for a function with no argument.

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3 msgs · May 31 – May 31

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Arman Sh BiocCheck requires example for a function with no argument. May 31, 2017

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Michael Lawrence BiocCheck requires example for a function with no argument. May 31, 2017

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Martin Morgan BiocCheck requires example for a function with no argument. May 31, 2017

BiocCheck requires example for a function with noargument.

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1 msg · May 31

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Michael Lawrence BiocCheck requires example for a function with noargument. May 31, 2017

BiocCheck requires example for a function withnoargument.

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1 msg · May 31

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Michael Lawrence BiocCheck requires example for a function withnoargument. May 31, 2017

Bioconductor Dockers have been updated

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1 msg · May 4

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Shepherd, Lori Bioconductor Dockers have been updated May 4, 2017

Build error: "Could not fetch a url"

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2 msgs · May 1 – May 1

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Kucukural, Alper Build error: "Could not fetch a url" May 1, 2017

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Hervé Pagès Build error: "Could not fetch a url" May 1, 2017

Build problem with malbec2

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6 msgs · May 10 – May 19

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Janssen-10, R.R.E. Build problem with malbec2 May 10, 2017

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Obenchain, Valerie Build problem with malbec2 May 10, 2017

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Janssen-10, R.R.E. Build problem with malbec2 May 10, 2017

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Janssen-10, R.R.E. Build problem with malbec2 May 15, 2017

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Janssen-10, R.R.E. Build problem with malbec2 May 19, 2017

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Hervé Pagès Build problem with malbec2 May 19, 2017

Can copy right holder and correspondence be two different individuals?

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1 msg · May 18

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Arman Sh Can copy right holder and correspondence be two different individuals? May 18, 2017

Can copy right holder and correspondence be two differentindividuals?

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4 msgs · May 20 – May 20

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Arman Sh Can copy right holder and correspondence be two differentindividuals? May 20, 2017

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Gabriel Becker Can copy right holder and correspondence be two differentindividuals? May 20, 2017

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Gabriel Becker Can copy right holder and correspondence be two differentindividuals? May 20, 2017

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Martin Morgan Can copy right holder and correspondence be two differentindividuals? May 20, 2017

DMRcate: TIMEOUT

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3 msgs · May 30 – May 31

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Tim Peters DMRcate: TIMEOUT May 30, 2017

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Sean Davis DMRcate: TIMEOUT May 31, 2017

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Martin Morgan DMRcate: TIMEOUT May 31, 2017

DataFrame errors with a Surv class column

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2 msgs · May 28 – May 30

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Levi Waldron DataFrame errors with a Surv class column May 28, 2017

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Michael Lawrence DataFrame errors with a Surv class column May 30, 2017

ERROR from SVN: URL access forbidden for unknown reason

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2 msgs · May 4 – May 5

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Lluís Revilla ERROR from SVN: URL access forbidden for unknown reason May 4, 2017

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Martin Morgan ERROR from SVN: URL access forbidden for unknown reason May 5, 2017

Error in BUILD report (anamiR)

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3 msgs · May 4 – May 5

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王棣台 Error in BUILD report (anamiR) May 4, 2017

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Hervé Pagès Error in BUILD report (anamiR) May 4, 2017

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Shepherd, Lori Error in BUILD report (anamiR) May 5, 2017

Error trying to update remotes

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4 msgs · May 25 – May 26

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Greg Gloor Error trying to update remotes May 25, 2017

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Martin Morgan Error trying to update remotes May 25, 2017

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Sean Davis Error trying to update remotes May 25, 2017

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greg gloor Error trying to update remotes May 26, 2017

Git Transition Plan

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1 msg · May 30

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Nathan Sheffield Git Transition Plan May 30, 2017

How can I fix a vignette error in tokay1

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4 msgs · May 23 – May 24

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Juan David Henao Sanchez How can I fix a vignette error in tokay1 May 23, 2017

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Obenchain, Valerie How can I fix a vignette error in tokay1 May 24, 2017

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Juan David Henao Sanchez How can I fix a vignette error in tokay1 May 24, 2017

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Obenchain, Valerie How can I fix a vignette error in tokay1 May 24, 2017

Question about BiocGeneric::order

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7 msgs · May 11 – May 12

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Ou, Jianhong Question about BiocGeneric::order May 11, 2017

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Hervé Pagès Question about BiocGeneric::order May 11, 2017

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Ou, Jianhong Question about BiocGeneric::order May 11, 2017

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Michael Lawrence Question about BiocGeneric::order May 11, 2017

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Hervé Pagès Question about BiocGeneric::order May 11, 2017

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Hervé Pagès Question about BiocGeneric::order May 11, 2017

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Michael Lawrence Question about BiocGeneric::order May 12, 2017

R6 and Bioconductor

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12 msgs · May 11 – May 14

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Garth Ilsley R6 and Bioconductor May 11, 2017

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Martin Morgan R6 and Bioconductor May 12, 2017

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Martin Morgan R6 and Bioconductor May 12, 2017

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Michael Lawrence R6 and Bioconductor May 12, 2017

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Garth Ilsley R6 and Bioconductor May 12, 2017

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Gabriel Becker R6 and Bioconductor May 12, 2017

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Michael Lawrence R6 and Bioconductor May 12, 2017

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Garth Ilsley R6 and Bioconductor May 13, 2017

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Garth Ilsley R6 and Bioconductor May 13, 2017

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Michael Lawrence R6 and Bioconductor May 13, 2017

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Garth Ilsley R6 and Bioconductor May 14, 2017

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Garth Ilsley R6 and Bioconductor May 14, 2017

Single Package Builder

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1 msg · May 2

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Shepherd, Lori Single Package Builder May 2, 2017

Survey results: How and why CRAN and Bioconductor developers handle breaking changes differently

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1 msg · May 30

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Chris Bogart Survey results: How and why CRAN and Bioconductor developers handle breaking changes differently May 30, 2017

Update/ replace package

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3 msgs · May 8 – May 9

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Christian Oertlin Update/ replace package May 8, 2017

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Martin Morgan Update/ replace package May 9, 2017

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Kasper Daniel Hansen Update/ replace package May 9, 2017

Using function from another package in R documentation when using roxygen

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2 msgs · May 27 – May 27

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Arman Sh Using function from another package in R documentation when using roxygen May 27, 2017

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Martin Morgan Using function from another package in R documentation when using roxygen May 27, 2017

adding methods to BiocGenerics

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6 msgs · May 19 – May 19

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Stephanie M. Gogarten adding methods to BiocGenerics May 19, 2017

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Laurent Gatto adding methods to BiocGenerics May 19, 2017

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Michael Lawrence adding methods to BiocGenerics May 19, 2017

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Martin Morgan adding methods to BiocGenerics May 19, 2017

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Michael Lawrence adding methods to BiocGenerics May 19, 2017

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Stephanie M. Gogarten adding methods to BiocGenerics May 19, 2017

build error on tokay1 related to Makeconf permission

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1 msg · May 24

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Alicia Schep build error on tokay1 related to Makeconf permission May 24, 2017

city/country or IP list for package downloading

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2 msgs · May 7 – May 8

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Zhao, Shilin city/country or IP list for package downloading May 7, 2017

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Martin Morgan city/country or IP list for package downloading May 8, 2017

fasta twobit for release 87 and 88 added to AnnotationHub

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1 msg · May 8

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Shepherd, Lori fasta twobit for release 87 and 88 added to AnnotationHub May 8, 2017

getAnnMap: org.Hs.eg.db package not attached and load is FALSE

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3 msgs · May 24 – May 24

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Rodriguez Martinez, Andrea getAnnMap: org.Hs.eg.db package not attached and load is FALSE May 24, 2017

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Vincent Carey getAnnMap: org.Hs.eg.db package not attached and load is FALSE May 24, 2017

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Rodriguez Martinez, Andrea getAnnMap: org.Hs.eg.db package not attached and load is FALSE May 24, 2017

github mirror out of sync for ensembldb

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4 msgs · May 3 – May 3

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Leonardo Collado Torres github mirror out of sync for ensembldb May 3, 2017

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Martin Morgan github mirror out of sync for ensembldb May 3, 2017

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Rainer Johannes github mirror out of sync for ensembldb May 3, 2017

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Leonardo Collado Torres github mirror out of sync for ensembldb May 3, 2017

invalid PDF version and NULL vector errors in unchanged package

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2 msgs · May 17 – May 18

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Sokratis Kariotis invalid PDF version and NULL vector errors in unchanged package May 17, 2017

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Wolfgang Huber invalid PDF version and NULL vector errors in unchanged package May 18, 2017

mzR: pwiz is now the default backend

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4 msgs · May 23 – May 23

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Laurent Gatto mzR: pwiz is now the default backend May 23, 2017

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Vladislav Petyuk mzR: pwiz is now the default backend May 23, 2017

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Laurent Gatto mzR: pwiz is now the default backend May 23, 2017

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Rainer Johannes mzR: pwiz is now the default backend May 23, 2017

openbabel 2.4.1

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4 msgs · May 22 – May 25

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Kevin Horan openbabel 2.4.1 May 22, 2017

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Obenchain, Valerie openbabel 2.4.1 May 23, 2017

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Obenchain, Valerie openbabel 2.4.1 May 24, 2017

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Obenchain, Valerie openbabel 2.4.1 May 25, 2017

package submission

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2 msgs · May 16 – May 16

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shailesh tripathi package submission May 16, 2017

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Martin Morgan package submission May 16, 2017

unable to push local changes to bioconductor svn repository

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2 msgs · May 11 – May 12

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Xu, Zongli (NIH/NIEHS) [E] unable to push local changes to bioconductor svn repository May 11, 2017

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Martin Morgan unable to push local changes to bioconductor svn repository May 12, 2017