Bioc-devel - October 2017 - Subject View

"extra" unit tests

11 msgs · Oct 24 – Oct 27

Accepted packages can't find each other and fail build

8 msgs · Oct 26 – Oct 31

Access to git repository

4 msgs · Oct 31 – Oct 31

Clare Pacini Access to git repository Oct 31, 2017 Shepherd, Lori Access to git repository Oct 31, 2017 Clare Pacini Access to git repository Oct 31, 2017 Shepherd, Lori Access to git repository Oct 31, 2017

Adding new maintainer

1 msg · Oct 20

sergi.picart at upc.edu Adding new maintainer Oct 20, 2017

BIOC devel 3.6 buid/check

3 msgs · Oct 6 – Oct 6

Mª José Nueda BIOC devel 3.6 buid/check Oct 6, 2017 Shepherd, Lori BIOC devel 3.6 buid/check Oct 6, 2017 Shepherd, Lori BIOC devel 3.6 buid/check Oct 6, 2017

Bad SSH key submissions

3 msgs · Oct 9 – Oct 10

Turaga, Nitesh Bad SSH key submissions Oct 9, 2017 Juan David Henao Sanchez Bad SSH key submissions Oct 9, 2017 Turaga, Nitesh Bad SSH key submissions Oct 10, 2017

BioC 3.6: BUILD/CHECK reports are not updating.

2 msgs · Oct 5 – Oct 5

Juan Cruz Rodríguez BioC 3.6: BUILD/CHECK reports are not updating. Oct 5, 2017 Shepherd, Lori BioC 3.6: BUILD/CHECK reports are not updating. Oct 5, 2017

BioC 3.6: CHECK report

2 msgs · Oct 5 – Oct 5

Juan David Henao Sanchez BioC 3.6: CHECK report Oct 5, 2017 Shepherd, Lori BioC 3.6: CHECK report Oct 5, 2017

BioC 3.6: timeouts on veracruz1 (OS X)

1 msg · Oct 12

Ramon Diaz-Uriarte BioC 3.6: timeouts on veracruz1 (OS X) Oct 12, 2017

Bioc Devel Version issue

3 msgs · Oct 27 – Oct 27

MikeMorgan Bioc Devel Version issue Oct 27, 2017 Shepherd, Lori Bioc Devel Version issue Oct 27, 2017 Michael Morgan Bioc Devel Version issue Oct 27, 2017

BiocGenerics request

3 msgs · Oct 13 – Oct 13

Stephanie M. Gogarten BiocGenerics request Oct 13, 2017 Hervé Pagès BiocGenerics request Oct 13, 2017 Stephanie M. Gogarten BiocGenerics request Oct 13, 2017

Bioconductor 3.6 release: 3.6 branch created

1 msg · Oct 30

Obenchain, Valerie Bioconductor 3.6 release: 3.6 branch created Oct 30, 2017

Bioconductor 3.6 release: OrgDb and TxDb annotations

1 msg · Oct 13

Van Twisk, Daniel Bioconductor 3.6 release: OrgDb and TxDb annotations Oct 13, 2017

Bioconductor 3.6 release: db0 annotations

1 msg · Oct 6

Obenchain, Valerie Bioconductor 3.6 release: db0 annotations Oct 6, 2017

Bioconductor 3.6 release: deadline for new packages

1 msg · Oct 3

Obenchain, Valerie Bioconductor 3.6 release: deadline for new packages Oct 3, 2017

Bioconductor 3.6 release: new package deadline

1 msg · Oct 6

Shepherd, Lori Bioconductor 3.6 release: new package deadline Oct 6, 2017

Bioconductor 3.6 release: stop commits to BioC 3.5

1 msg · Oct 17

Obenchain, Valerie Bioconductor 3.6 release: stop commits to BioC 3.5 Oct 17, 2017

Bioconductor 3.6 release: stop commits to git.bioconductor.org

1 msg · Oct 30

Obenchain, Valerie Bioconductor 3.6 release: stop commits to git.bioconductor.org Oct 30, 2017

Bioconductor 3.6 release: update NEWS

3 msgs · Oct 13 – Oct 14

Obenchain, Valerie Bioconductor 3.6 release: update NEWS Oct 13, 2017 Stian Lågstad Bioconductor 3.6 release: update NEWS Oct 14, 2017 Martin Morgan Bioconductor 3.6 release: update NEWS Oct 14, 2017

Bioconductor Git: Online interface

3 msgs · Oct 25 – Oct 26

Henrik Bengtsson Bioconductor Git: Online interface Oct 25, 2017 Stian Lågstad Bioconductor Git: Online interface Oct 26, 2017 Martin Morgan Bioconductor Git: Online interface Oct 26, 2017

Bioconductor support for explicit SSE vectorization

1 msg · Oct 10

Benjamin Callahan Bioconductor support for explicit SSE vectorization Oct 10, 2017

Build warnings for missing documentation on defunct functions

2 msgs · Oct 24 – Oct 24

Janssen-10, R.R.E. Build warnings for missing documentation on defunct functions Oct 24, 2017 Obenchain, Valerie Build warnings for missing documentation on defunct functions Oct 24, 2017

Can't push to git

1 msg · Oct 10

Thomas J Hardcastle Can't push to git Oct 10, 2017

Cannot move 'xps' to GIT

3 msgs · Oct 8 – Oct 12

cstrato Cannot move 'xps' to GIT Oct 8, 2017 Martin Morgan Cannot move 'xps' to GIT Oct 12, 2017 cstrato Cannot move 'xps' to GIT Oct 12, 2017

Cannot reproduce Bioc build server errors for annotatr package

3 msgs · Oct 23 – Oct 26

Raymond Cavalcante Cannot reproduce Bioc build server errors for annotatr package Oct 23, 2017 Martin Morgan Cannot reproduce Bioc build server errors for annotatr package Oct 26, 2017 Raymond Cavalcante Cannot reproduce Bioc build server errors for annotatr package Oct 26, 2017

Cardinal duplicate commits

1 msg · Oct 17

Bemis, Kylie Cardinal duplicate commits Oct 17, 2017

Changes in 'digest' mode

1 msg · Oct 2

Martin Morgan Changes in 'digest' mode Oct 2, 2017

DOI for packages

3 msgs · Oct 19 – Oct 19

Shepherd, Lori DOI for packages Oct 19, 2017 Laurent Gatto DOI for packages Oct 19, 2017 Martin Morgan DOI for packages Oct 19, 2017

Difficulty obtaining access to BioC git repository

9 msgs · Oct 5 – Oct 10

Doscheda package edit

1 msg · Oct 11

Piero Ricchiuto Doscheda package edit Oct 11, 2017

Duplicate commit error on and off

7 msgs · Oct 4 – Oct 6

Turaga, Nitesh Duplicate commit error on and off Oct 4, 2017 Turaga, Nitesh Duplicate commit error on and off Oct 4, 2017 Turaga, Nitesh Duplicate commit error on and off Oct 5, 2017 Turaga, Nitesh Duplicate commit error on and off Oct 5, 2017 Thomas Girke Duplicate commit error on and off Oct 5, 2017 Turaga, Nitesh Duplicate commit error on and off Oct 5, 2017 Turaga, Nitesh Duplicate commit error on and off Oct 6, 2017

EXTERNAL: Adding new maintainer

1 msg · Oct 20

Shepherd, Lori EXTERNAL: Adding new maintainer Oct 20, 2017

EXTERNAL: BioC 3.6: timeouts on veracruz1 (OS X)

2 msgs · Oct 13 – Oct 13

Martin Morgan EXTERNAL: BioC 3.6: timeouts on veracruz1 (OS X) Oct 13, 2017 Ramon Diaz-Uriarte EXTERNAL: BioC 3.6: timeouts on veracruz1 (OS X) Oct 13, 2017

EXTERNAL: Can't push to git

3 msgs · Oct 10 – Oct 11

Turaga, Nitesh EXTERNAL: Can't push to git Oct 10, 2017 Thomas J Hardcastle EXTERNAL: Can't push to git Oct 11, 2017 Shepherd, Lori EXTERNAL: Can't push to git Oct 11, 2017

EXTERNAL: Cardinal duplicate commits

2 msgs · Oct 17 – Oct 18

Turaga, Nitesh EXTERNAL: Cardinal duplicate commits Oct 17, 2017 Turaga, Nitesh EXTERNAL: Cardinal duplicate commits Oct 18, 2017

EXTERNAL: Doscheda package edit

1 msg · Oct 11

Martin Morgan EXTERNAL: Doscheda package edit Oct 11, 2017

EXTERNAL: Fail to push changes on RELEASE_3_5

1 msg · Oct 18

Shepherd, Lori EXTERNAL: Fail to push changes on RELEASE_3_5 Oct 18, 2017

EXTERNAL: Fetuching Upstream Permission Denied

2 msgs · Oct 11 – Oct 11

Martin Morgan EXTERNAL: Fetuching Upstream Permission Denied Oct 11, 2017 Dario Strbenac EXTERNAL: Fetuching Upstream Permission Denied Oct 11, 2017

EXTERNAL: Git access for PhenStat contribute

1 msg · Oct 11

Turaga, Nitesh EXTERNAL: Git access for PhenStat contribute Oct 11, 2017

EXTERNAL: Git push error and duplicate commits

3 msgs · Oct 13 – Oct 13

Turaga, Nitesh EXTERNAL: Git push error and duplicate commits Oct 13, 2017 Turaga, Nitesh EXTERNAL: Git push error and duplicate commits Oct 13, 2017 Turaga, Nitesh EXTERNAL: Git push error and duplicate commits Oct 13, 2017

EXTERNAL: Increase timeout for mzR on Windows?

3 msgs · Oct 11 – Oct 11

Martin Morgan EXTERNAL: Increase timeout for mzR on Windows? Oct 11, 2017 Rainer Johannes EXTERNAL: Increase timeout for mzR on Windows? Oct 11, 2017 Laurent Gatto EXTERNAL: Increase timeout for mzR on Windows? Oct 11, 2017

EXTERNAL: Issues of package updating

1 msg · Oct 16

Shepherd, Lori EXTERNAL: Issues of package updating Oct 16, 2017

EXTERNAL: Needs access to devel Git Repository

1 msg · Oct 18

Turaga, Nitesh EXTERNAL: Needs access to devel Git Repository Oct 18, 2017

EXTERNAL: Permission denied (publickey)

3 msgs · Oct 12 – Oct 12

Shepherd, Lori EXTERNAL: Permission denied (publickey) Oct 12, 2017 Eugenia Galeota EXTERNAL: Permission denied (publickey) Oct 12, 2017 Turaga, Nitesh EXTERNAL: Permission denied (publickey) Oct 12, 2017

EXTERNAL: R version dependence of a new package

2 msgs · Oct 20 – Oct 23

Shepherd, Lori EXTERNAL: R version dependence of a new package Oct 20, 2017 Yaoyong Li EXTERNAL: R version dependence of a new package Oct 23, 2017

EXTERNAL: Unable to push to git

1 msg · Oct 18

Shepherd, Lori EXTERNAL: Unable to push to git Oct 18, 2017

EXTERNAL: Webhooks not working?

2 msgs · Oct 20 – Oct 20

Shepherd, Lori EXTERNAL: Webhooks not working? Oct 20, 2017 Shepherd, Lori EXTERNAL: Webhooks not working? Oct 20, 2017

EXTERNAL: can not fetch git upstream repository

1 msg · Oct 10

Martin Morgan EXTERNAL: can not fetch git upstream repository Oct 10, 2017

EXTERNAL: change maintainer of a package

1 msg · Oct 10

Martin Morgan EXTERNAL: change maintainer of a package Oct 10, 2017

EXTERNAL: error: Could not fetch upstream

3 msgs · Oct 10 – Oct 10

Turaga, Nitesh EXTERNAL: error: Could not fetch upstream Oct 10, 2017 Turaga, Nitesh EXTERNAL: error: Could not fetch upstream Oct 10, 2017 Martin Morgan EXTERNAL: error: Could not fetch upstream Oct 10, 2017

EXTERNAL: git push problem to bioconductor

2 msgs · Oct 13 – Oct 13

Martin Morgan EXTERNAL: git push problem to bioconductor Oct 13, 2017 Riccardo Romoli EXTERNAL: git push problem to bioconductor Oct 13, 2017

EXTERNAL: git push to devel versions

1 msg · Oct 11

Martin Morgan EXTERNAL: git push to devel versions Oct 11, 2017

EXTERNAL: Bioconductor support for explicit SSE vectorization

1 msg · Oct 10

Martin Morgan EXTERNAL: Bioconductor support for explicit SSE vectorization Oct 10, 2017

EXTERNAL: Can't push to git

1 msg · Oct 11

Martin Morgan EXTERNAL: Can't push to git Oct 11, 2017

EXTERNAL: FW: attract problems reported by the "Build/check report" for BioC 3.5

2 msgs · Oct 17 – Oct 18

Obenchain, Valerie EXTERNAL: FW: attract problems reported by the "Build/check report" for BioC 3.5 Oct 17, 2017 Samuel E Zimmerman EXTERNAL: FW: attract problems reported by the "Build/check report" for BioC 3.5 Oct 18, 2017

EXTERNAL: Fetuching Upstream Permission Denied

2 msgs · Oct 11 – Oct 11

Martin Morgan EXTERNAL: Fetuching Upstream Permission Denied Oct 11, 2017 Dario Strbenac EXTERNAL: Fetuching Upstream Permission Denied Oct 11, 2017

EXTERNAL: Git push error and duplicate commits

4 msgs · Oct 13 – Oct 19

Matthew Myint EXTERNAL: Git push error and duplicate commits Oct 13, 2017 Turaga, Nitesh EXTERNAL: Git push error and duplicate commits Oct 13, 2017 Turaga, Nitesh EXTERNAL: Git push error and duplicate commits Oct 18, 2017 Matthew Myint EXTERNAL: Git push error and duplicate commits Oct 19, 2017

EXTERNAL: Increase timeout for mzR on Windows?

5 msgs · Oct 11 – Oct 15

Martin Morgan EXTERNAL: Increase timeout for mzR on Windows? Oct 11, 2017 Hervé Pagès EXTERNAL: Increase timeout for mzR on Windows? Oct 11, 2017 Neumann, Steffen EXTERNAL: Increase timeout for mzR on Windows? Oct 13, 2017 Kasper Daniel Hansen EXTERNAL: Increase timeout for mzR on Windows? Oct 14, 2017 Neumann, Steffen EXTERNAL: Increase timeout for mzR on Windows? Oct 15, 2017

EXTERNAL: Landing page not updating version number

1 msg · Oct 12

Obenchain, Valerie EXTERNAL: Landing page not updating version number Oct 12, 2017

EXTERNAL: Permission Denied when pushing to bioc repo

2 msgs · Oct 16 – Oct 16

Turaga, Nitesh EXTERNAL: Permission Denied when pushing to bioc repo Oct 16, 2017 Turaga, Nitesh EXTERNAL: Permission Denied when pushing to bioc repo Oct 16, 2017

EXTERNAL: Permission denied (publickey) while pushing changes to Github

1 msg · Oct 24

Turaga, Nitesh EXTERNAL: Permission denied (publickey) while pushing changes to Github Oct 24, 2017

EXTERNAL: Permission denied (publickey) while pushing changes to Github

1 msg · Oct 24

Sokratis Kariotis EXTERNAL: Permission denied (publickey) while pushing changes to Github Oct 24, 2017

EXTERNAL: Permission denied for ImmuneSpaceR repo

2 msgs · Oct 13 – Oct 13

Turaga, Nitesh EXTERNAL: Permission denied for ImmuneSpaceR repo Oct 13, 2017 Immune Space EXTERNAL: Permission denied for ImmuneSpaceR repo Oct 13, 2017

EXTERNAL: R version dependence of a new package

3 msgs · Oct 24 – Oct 25

Stephanie M. Gogarten EXTERNAL: R version dependence of a new package Oct 24, 2017 Henrik Bengtsson EXTERNAL: R version dependence of a new package Oct 25, 2017 Hervé Pagès EXTERNAL: R version dependence of a new package Oct 25, 2017

EXTERNAL: RE: Failing bioconductor package KEGGprofile

1 msg · Oct 17

Turaga, Nitesh EXTERNAL: RE: Failing bioconductor package KEGGprofile Oct 17, 2017

EXTERNAL: Re: Cannot move 'xps' to GIT

3 msgs · Oct 12 – Oct 13

Martin Morgan EXTERNAL: Re: Cannot move 'xps' to GIT Oct 12, 2017 cstrato EXTERNAL: Re: Cannot move 'xps' to GIT Oct 13, 2017 Turaga, Nitesh EXTERNAL: Re: Cannot move 'xps' to GIT Oct 13, 2017

EXTERNAL: Re: DOI for packages

1 msg · Oct 19

Shepherd, Lori EXTERNAL: Re: DOI for packages Oct 19, 2017

EXTERNAL: Re: Enabling SSH keys

1 msg · Oct 10

Turaga, Nitesh EXTERNAL: Re: Enabling SSH keys Oct 10, 2017

EXTERNAL: Re: Git permission denied (publickey)

2 msgs · Oct 10 – Oct 10

Martin Morgan EXTERNAL: Re: Git permission denied (publickey) Oct 10, 2017 Sebastian Gibb EXTERNAL: Re: Git permission denied (publickey) Oct 10, 2017

EXTERNAL: Re: Bioconductor 3.6 release: update NEWS

2 msgs · Oct 15 – Oct 15

Obenchain, Valerie EXTERNAL: Re: Bioconductor 3.6 release: update NEWS Oct 15, 2017 Obenchain, Valerie EXTERNAL: Re: Bioconductor 3.6 release: update NEWS Oct 15, 2017

EXTERNAL: Re: Cannot move 'xps' to GIT

5 msgs · Oct 14 – Oct 16

cstrato EXTERNAL: Re: Cannot move 'xps' to GIT Oct 14, 2017 cstrato EXTERNAL: Re: Cannot move 'xps' to GIT Oct 15, 2017 cstrato EXTERNAL: Re: Cannot move 'xps' to GIT Oct 15, 2017 Martin Morgan EXTERNAL: Re: Cannot move 'xps' to GIT Oct 15, 2017 cstrato EXTERNAL: Re: Cannot move 'xps' to GIT Oct 16, 2017

EXTERNAL: Re: Difficulty obtaining access to BioC git repository

5 msgs · Oct 11 – Oct 11

Turaga, Nitesh EXTERNAL: Re: Difficulty obtaining access to BioC git repository Oct 11, 2017 Raborn, R. Taylor EXTERNAL: Re: Difficulty obtaining access to BioC git repository Oct 11, 2017 Martin Morgan EXTERNAL: Re: Difficulty obtaining access to BioC git repository Oct 11, 2017 Turaga, Nitesh EXTERNAL: Re: Difficulty obtaining access to BioC git repository Oct 11, 2017 Raborn, R. Taylor EXTERNAL: Re: Difficulty obtaining access to BioC git repository Oct 11, 2017

EXTERNAL: Re: IMPCdata push permissions to git repo

1 msg · Oct 23

Shepherd, Lori EXTERNAL: Re: IMPCdata push permissions to git repo Oct 23, 2017

EXTERNAL: Re: MSnID failing on release and devel

1 msg · Oct 10

Turaga, Nitesh EXTERNAL: Re: MSnID failing on release and devel Oct 10, 2017

EXTERNAL: Re: MSnID failing on release and devel

8 msgs · Oct 10 – Oct 11

EXTERNAL: Re: failing Bioconductor Package groHMM

5 msgs · Oct 11 – Oct 16

Turaga, Nitesh EXTERNAL: Re: failing Bioconductor Package groHMM Oct 11, 2017 Turaga, Nitesh EXTERNAL: Re: failing Bioconductor Package groHMM Oct 11, 2017 Anusha Nagari EXTERNAL: Re: failing Bioconductor Package groHMM Oct 11, 2017 Hervé Pagès EXTERNAL: Re: failing Bioconductor Package groHMM Oct 11, 2017 Anusha Nagari EXTERNAL: Re: failing Bioconductor Package groHMM Oct 16, 2017

EXTERNAL: Re: name of git repo for brgedata/BRGEdata package

3 msgs · Oct 24 – Oct 30

Turaga, Nitesh EXTERNAL: Re: name of git repo for brgedata/BRGEdata package Oct 24, 2017 Shepherd, Lori EXTERNAL: Re: name of git repo for brgedata/BRGEdata package Oct 24, 2017 Turaga, Nitesh EXTERNAL: Re: name of git repo for brgedata/BRGEdata package Oct 30, 2017

EXTERNAL: Unexpected message when using 'git commit'

4 msgs · Oct 16 – Oct 17

Turaga, Nitesh EXTERNAL: Unexpected message when using 'git commit' Oct 16, 2017 cstrato EXTERNAL: Unexpected message when using 'git commit' Oct 16, 2017 Turaga, Nitesh EXTERNAL: Unexpected message when using 'git commit' Oct 17, 2017 cstrato EXTERNAL: Unexpected message when using 'git commit' Oct 17, 2017

EXTERNAL: Webhooks not working?

1 msg · Oct 20

Leslie Myint EXTERNAL: Webhooks not working? Oct 20, 2017

EXTERNAL: whitespace or or end of line format conflict in git merge

1 msg · Oct 12

Turaga, Nitesh EXTERNAL: whitespace or or end of line format conflict in git merge Oct 12, 2017

Enabling SSH keys

2 msgs · Oct 8 – Oct 9

mohammed Elsiddieg Enabling SSH keys Oct 8, 2017 Turaga, Nitesh Enabling SSH keys Oct 9, 2017

Encoding issues with citations (Windows only)

2 msgs · Oct 2 – Oct 17

Leonardo Collado Torres Encoding issues with citations (Windows only) Oct 2, 2017 Leonardo Collado Torres Encoding issues with citations (Windows only) Oct 17, 2017

Error in building vignette

3 msgs · Oct 19 – Oct 19

sergi.picart at upc.edu Error in building vignette Oct 19, 2017 Moritz Gerstung Error in building vignette Oct 19, 2017 Martin Morgan Error in building vignette Oct 19, 2017

Fail to push changes on RELEASE_3_5

1 msg · Oct 18

mohammed Elsiddieg Fail to push changes on RELEASE_3_5 Oct 18, 2017

Failure to create PDF vignette with BiocStyle 2.4.1

2 msgs · Oct 3 – Oct 3

Stefan Mutter Failure to create PDF vignette with BiocStyle 2.4.1 Oct 3, 2017 Vincent Carey Failure to create PDF vignette with BiocStyle 2.4.1 Oct 3, 2017

Fetuching Upstream Permission Denied

1 msg · Oct 11

Dario Strbenac Fetuching Upstream Permission Denied Oct 11, 2017

GEOmetadb package is missing "Organism" metadata field in all GSE accession IDs

2 msgs · Oct 14 – Oct 15

Bohdan Khomtchouk GEOmetadb package is missing "Organism" metadata field in all GSE accession IDs Oct 14, 2017 Vincent Carey GEOmetadb package is missing "Organism" metadata field in all GSE accession IDs Oct 15, 2017

Git access for PhenStat contribute

1 msg · Oct 11

jmason Git access for PhenStat contribute Oct 11, 2017

Git permission denied (publickey)

4 msgs · Oct 9 – Oct 19

Andrea Rau Git permission denied (publickey) Oct 9, 2017 Turaga, Nitesh Git permission denied (publickey) Oct 9, 2017 Sebastian Gibb Git permission denied (publickey) Oct 10, 2017 Andrea Rau Git permission denied (publickey) Oct 19, 2017

Git push error and duplicate commits

1 msg · Oct 13

Matthew Myint Git push error and duplicate commits Oct 13, 2017

Git related or ssh queries to bioc-devel

1 msg · Oct 10

Turaga, Nitesh Git related or ssh queries to bioc-devel Oct 10, 2017

Gviz Abandonware

4 msgs · Oct 20 – Oct 20

Dario Strbenac Gviz Abandonware Oct 20, 2017 Hahne, Florian Gviz Abandonware Oct 20, 2017 Martin Morgan Gviz Abandonware Oct 20, 2017 Dario Strbenac Gviz Abandonware Oct 20, 2017

Help with R CMD check NOTEs

5 msgs · Oct 18 – Oct 18

Anusha Nagari Help with R CMD check NOTEs Oct 18, 2017 Pariksheet Nanda Help with R CMD check NOTEs Oct 18, 2017 Hervé Pagès Help with R CMD check NOTEs Oct 18, 2017 Anusha Nagari Help with R CMD check NOTEs Oct 18, 2017 Pariksheet Nanda Help with R CMD check NOTEs Oct 18, 2017

Help with a Gviz-plot that differs on a Mac and on an Ubuntu machine

1 msg · Oct 22

Dario Strbenac Help with a Gviz-plot that differs on a Mac and on an Ubuntu machine Oct 22, 2017

Help with a Gviz-plot that differs on a Mac and on an Ubuntu machine

2 msgs · Oct 22 – Oct 24

Stian Lågstad Help with a Gviz-plot that differs on a Mac and on an Ubuntu machine Oct 22, 2017 Stian Lågstad Help with a Gviz-plot that differs on a Mac and on an Ubuntu machine Oct 24, 2017

How to recreate R CMD BUILD environment in interactive session?

12 msgs · Oct 23 – Oct 23

I can't merge the changes by bioc team with my accepted package

1 msg · Oct 31

Arman Shahrisa I can't merge the changes by bioc team with my accepted package Oct 31, 2017

IMPCdata push permissions to git repo

4 msgs · Oct 19 – Oct 20

jmason IMPCdata push permissions to git repo Oct 19, 2017 Martin Morgan IMPCdata push permissions to git repo Oct 19, 2017 jmason IMPCdata push permissions to git repo Oct 19, 2017 Carles Hernández IMPCdata push permissions to git repo Oct 20, 2017

Increase timeout for mzR on Windows?

1 msg · Oct 11

Rainer Johannes Increase timeout for mzR on Windows? Oct 11, 2017

Install directly from the bioconductor git repo?

4 msgs · Oct 24 – Oct 25

Stian Lågstad Install directly from the bioconductor git repo? Oct 24, 2017 Martin Morgan Install directly from the bioconductor git repo? Oct 24, 2017 Stian Lågstad Install directly from the bioconductor git repo? Oct 24, 2017 Martin Morgan Install directly from the bioconductor git repo? Oct 25, 2017

Issues of package updating

1 msg · Oct 16

Tsu-Pei Chiu (Lester) Issues of package updating Oct 16, 2017

Landing page not updating version number

1 msg · Oct 12

Erik Fasterius Landing page not updating version number Oct 12, 2017

Long-form documentation for DelayedArray?

6 msgs · Oct 29 – Oct 30

Gmail Long-form documentation for DelayedArray? Oct 29, 2017 Hervé Pagès Long-form documentation for DelayedArray? Oct 29, 2017 Peter Hickey Long-form documentation for DelayedArray? Oct 29, 2017 Gmail Long-form documentation for DelayedArray? Oct 30, 2017 Gmail Long-form documentation for DelayedArray? Oct 30, 2017 Gmail Long-form documentation for DelayedArray? Oct 30, 2017

Modeling (statistic, p-value) pairs in MultiAssayExperiment

13 msgs · Oct 23 – Oct 25

MultiAssayExperiment compared to SummarizedExperiment (was: Why should Bioconductor developers re-use core classes?)

3 msgs · Oct 19 – Oct 19

Levi Waldron MultiAssayExperiment compared to SummarizedExperiment (was: Why should Bioconductor developers re-use core classes?) Oct 19, 2017 Tim Triche, Jr. MultiAssayExperiment compared to SummarizedExperiment (was: Why should Bioconductor developers re-use core classes?) Oct 19, 2017 Tim Triche, Jr. MultiAssayExperiment compared to SummarizedExperiment (was: Why should Bioconductor developers re-use core classes?) Oct 19, 2017

Needs access to devel Git Repository

1 msg · Oct 17

Yang Liao Needs access to devel Git Repository Oct 17, 2017

No build report today & Automatic build/check failure notifications activated for BioC 3.7

2 msgs · Oct 23 – Oct 23

Hervé Pagès No build report today & Automatic build/check failure notifications activated for BioC 3.7 Oct 23, 2017 Hervé Pagès No build report today & Automatic build/check failure notifications activated for BioC 3.7 Oct 23, 2017

Old package versions / Bioc archive of package's *.tar.gz releases?

10 msgs · Oct 5 – Oct 5

OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6

1 msg · Oct 27

Shepherd, Lori OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6 Oct 27, 2017

Organism.dplyr::supportedFilters warning

4 msgs · Oct 3 – Oct 5

Ludwig Geistlinger Organism.dplyr::supportedFilters warning Oct 3, 2017 Lucas Schiffer Organism.dplyr::supportedFilters warning Oct 3, 2017 Van Twisk, Daniel Organism.dplyr::supportedFilters warning Oct 3, 2017 Van Twisk, Daniel Organism.dplyr::supportedFilters warning Oct 5, 2017

Package additional maintainers

4 msgs · Oct 31 – Oct 31

Fatemehsadat Seyednasrollah Package additional maintainers Oct 31, 2017 Wolfgang Huber Package additional maintainers Oct 31, 2017 Stephanie M. Gogarten Package additional maintainers Oct 31, 2017 Martin Morgan Package additional maintainers Oct 31, 2017

Package build error

11 msgs · Oct 26 – Oct 27

Package failure due to GenomicFeatures update

3 msgs · Oct 22 – Oct 23

Bora.Uyar at mdc-berlin.de Package failure due to GenomicFeatures update Oct 22, 2017 Hervé Pagès Package failure due to GenomicFeatures update Oct 22, 2017 Bora.Uyar at mdc-berlin.de Package failure due to GenomicFeatures update Oct 23, 2017

Package missing from the latest build report?

1 msg · Oct 16

Stian Lågstad Package missing from the latest build report? Oct 16, 2017

Package un-deprecation

3 msgs · Oct 30 – Oct 31

Turaga, Nitesh Package un-deprecation Oct 30, 2017 Shepherd, Lori Package un-deprecation Oct 30, 2017 sergi.picart at upc.edu Package un-deprecation Oct 31, 2017

Package update not showing on Bioc 3.6 webpage

2 msgs · Oct 30 – Oct 30

kushal kumar dey Package update not showing on Bioc 3.6 webpage Oct 30, 2017 Hervé Pagès Package update not showing on Bioc 3.6 webpage Oct 30, 2017

Permission Denied when pushing to bioc repo

1 msg · Oct 16

Thomas Sherman Permission Denied when pushing to bioc repo Oct 16, 2017

Permission denied (publickey)

1 msg · Oct 12

Eugenia Galeota Permission denied (publickey) Oct 12, 2017

Permission denied (publickey) while pushing changes to Github

1 msg · Oct 24

Sokratis Kariotis Permission denied (publickey) while pushing changes to Github Oct 24, 2017

Problem building package with devtools+Rcpp

1 msg · Oct 6

sergi.picart at upc.edu Problem building package with devtools+Rcpp Oct 6, 2017

Problem with html vignette in BiocStyle 2.5.39

4 msgs · Oct 4 – Oct 5

Stefan Mutter Problem with html vignette in BiocStyle 2.5.39 Oct 4, 2017 Andrzej Oleś Problem with html vignette in BiocStyle 2.5.39 Oct 5, 2017 Stefan Mutter Problem with html vignette in BiocStyle 2.5.39 Oct 5, 2017 Stefan Mutter Problem with html vignette in BiocStyle 2.5.39 Oct 5, 2017

Problem with the MAC build machine

3 msgs · Oct 24 – Oct 24

mohammed Elsiddieg Problem with the MAC build machine Oct 24, 2017 Matt Richards Problem with the MAC build machine Oct 24, 2017 Martin Morgan Problem with the MAC build machine Oct 24, 2017

Push to both Bioconductor and GitHub for coMET package

1 msg · Oct 30

Martin, Tiphaine Push to both Bioconductor and GitHub for coMET package Oct 30, 2017

Push to both Bioconductor and GitHub for coMET package

5 msgs · Oct 30 – Oct 30

Martin, Tiphaine Push to both Bioconductor and GitHub for coMET package Oct 30, 2017 Martin, Tiphaine Push to both Bioconductor and GitHub for coMET package Oct 30, 2017 Martin, Tiphaine Push to both Bioconductor and GitHub for coMET package Oct 30, 2017 Martin Morgan Push to both Bioconductor and GitHub for coMET package Oct 30, 2017 Martin, Tiphaine Push to both Bioconductor and GitHub for coMET package Oct 30, 2017

Query regarding size limit and including external datasets

6 msgs · Oct 1 – Oct 2

Anand MT Query regarding size limit and including external datasets Oct 1, 2017 Kasper Daniel Hansen Query regarding size limit and including external datasets Oct 1, 2017 Anand MT Query regarding size limit and including external datasets Oct 1, 2017 Tim Triche, Jr. Query regarding size limit and including external datasets Oct 1, 2017 Anand MT Query regarding size limit and including external datasets Oct 1, 2017 Martin Morgan Query regarding size limit and including external datasets Oct 2, 2017

R version dependence of a new package

1 msg · Oct 20

Yaoyong Li R version dependence of a new package Oct 20, 2017

R6 class v.s. S4 class

13 msgs · Oct 19 – Oct 20

Reset packages with duplicate commits

1 msg · Oct 26

Turaga, Nitesh Reset packages with duplicate commits Oct 26, 2017

S4Vectors::DataFrame, S4Vectors::cbind() and non-elementwise metadata

3 msgs · Oct 25 – Oct 25

Robert Castelo S4Vectors::DataFrame, S4Vectors::cbind() and non-elementwise metadata Oct 25, 2017 Hervé Pagès S4Vectors::DataFrame, S4Vectors::cbind() and non-elementwise metadata Oct 25, 2017 Robert Castelo S4Vectors::DataFrame, S4Vectors::cbind() and non-elementwise metadata Oct 25, 2017

Several ssh keys ?

2 msgs · Oct 2 – Oct 2

Bernat Gel Several ssh keys ? Oct 2, 2017 Martin Morgan Several ssh keys ? Oct 2, 2017

Shields/Badges on Package landing pages

3 msgs · Oct 24 – Oct 24

Shepherd, Lori Shields/Badges on Package landing pages Oct 24, 2017 Arman Shahrisa Shields/Badges on Package landing pages Oct 24, 2017 Shepherd, Lori Shields/Badges on Package landing pages Oct 24, 2017

ShortRead readFasta UniProt Incorrect Import

3 msgs · Oct 17 – Oct 18

Dario Strbenac ShortRead readFasta UniProt Incorrect Import Oct 17, 2017 Martin Morgan ShortRead readFasta UniProt Incorrect Import Oct 18, 2017 Hervé Pagès ShortRead readFasta UniProt Incorrect Import Oct 18, 2017

Superscript in BiocStyle 2.5.39 html document seems to be not working

2 msgs · Oct 22 – Oct 23

Stefan Mutter Superscript in BiocStyle 2.5.39 html document seems to be not working Oct 22, 2017 Andrzej Oleś Superscript in BiocStyle 2.5.39 html document seems to be not working Oct 23, 2017

Unable to push to git

1 msg · Oct 17

Kristoffer Vitting-Seerup Unable to push to git Oct 17, 2017

Unable to reproduce error!

7 msgs · Oct 20 – Oct 30

Paolo Martini Unable to reproduce error! Oct 20, 2017 Martin Morgan Unable to reproduce error! Oct 20, 2017 Paolo Martini Unable to reproduce error! Oct 20, 2017 Hervé Pagès Unable to reproduce error! Oct 20, 2017 Paolo Martini Unable to reproduce error! Oct 21, 2017 Hervé Pagès Unable to reproduce error! Oct 21, 2017 laurent jacob Unable to reproduce error! Oct 30, 2017

Unexpected message when using 'git commit'

1 msg · Oct 16

cstrato Unexpected message when using 'git commit' Oct 16, 2017

Unnecessary NOTE in BiocCheck

2 msgs · Oct 16 – Oct 16

Lucas Schiffer Unnecessary NOTE in BiocCheck Oct 16, 2017 Vincent Carey Unnecessary NOTE in BiocCheck Oct 16, 2017

Updating Rsamtools to support BAMs with >65535 CIGAR operators

3 msgs · Oct 18 – Oct 18

Heng Li Updating Rsamtools to support BAMs with >65535 CIGAR operators Oct 18, 2017 Martin Morgan Updating Rsamtools to support BAMs with >65535 CIGAR operators Oct 18, 2017 Heng Li Updating Rsamtools to support BAMs with >65535 CIGAR operators Oct 18, 2017

Warning that namespace of my package not available for my data object

1 msg · Oct 26

Elizabeth Purdom Warning that namespace of my package not available for my data object Oct 26, 2017

Webhooks not working?

1 msg · Oct 20

Leslie Myint Webhooks not working? Oct 20, 2017

Why should Bioconductor developers re-use core classes?

1 msg · Oct 18

Dario Strbenac Why should Bioconductor developers re-use core classes? Oct 18, 2017

Why should Bioconductor developers re-use core classes?

16 msgs · Oct 17 – Oct 19

Workflow builder failing at postprocessing step

4 msgs · Oct 11 – Oct 13

Leonardo Collado Torres Workflow builder failing at postprocessing step Oct 11, 2017 Andrzej Oleś Workflow builder failing at postprocessing step Oct 11, 2017 Leonardo Collado Torres Workflow builder failing at postprocessing step Oct 12, 2017 Andrzej Oleś Workflow builder failing at postprocessing step Oct 13, 2017

attract problems reported by the "Build/check report" for BioC 3.5

1 msg · Oct 17

Samuel E Zimmerman attract problems reported by the "Build/check report" for BioC 3.5 Oct 17, 2017

can not fetch git upstream repository

1 msg · Oct 10

Yu Kong can not fetch git upstream repository Oct 10, 2017

can't reproduce error message from build report

1 msg · Oct 16

Sitte, Maren can't reproduce error message from build report Oct 16, 2017

cellbaseR build

3 msgs · Oct 23 – Oct 23

mohammed Elsiddieg cellbaseR build Oct 23, 2017 Hervé Pagès cellbaseR build Oct 23, 2017 mohammed Elsiddieg cellbaseR build Oct 23, 2017

change maintainer of a package

1 msg · Oct 10

Christoph Bernau change maintainer of a package Oct 10, 2017

cherry picking fixes to release

1 msg · Oct 3

Turaga, Nitesh cherry picking fixes to release Oct 3, 2017

clarification of the BiocParallel vignette for SnowParam() usage

2 msgs · Oct 10 – Oct 10

Aaron Lun clarification of the BiocParallel vignette for SnowParam() usage Oct 10, 2017 Martin Morgan clarification of the BiocParallel vignette for SnowParam() usage Oct 10, 2017

error: Could not fetch upstream

1 msg · Oct 10

greg gloor error: Could not fetch upstream Oct 10, 2017

exonsBy dropping genes from TxDb

7 msgs · Oct 27 – Oct 30

Leonard Goldstein exonsBy dropping genes from TxDb Oct 27, 2017 Hervé Pagès exonsBy dropping genes from TxDb Oct 27, 2017 Hervé Pagès exonsBy dropping genes from TxDb Oct 27, 2017 Dario Strbenac exonsBy dropping genes from TxDb Oct 28, 2017 Mike Smith exonsBy dropping genes from TxDb Oct 28, 2017 Hervé Pagès exonsBy dropping genes from TxDb Oct 29, 2017 Leonard Goldstein exonsBy dropping genes from TxDb Oct 30, 2017

external dependencies

6 msgs · Oct 2 – Oct 2

Anna Gogleva external dependencies Oct 2, 2017 Shepherd, Lori external dependencies Oct 2, 2017 Anna Gogleva external dependencies Oct 2, 2017 Martin Morgan external dependencies Oct 2, 2017 Vincent Carey external dependencies Oct 2, 2017 Anna Gogleva external dependencies Oct 2, 2017

git clone failed from git.bioconductor.org

3 msgs · Oct 2 – Oct 2

Juan David Henao Sanchez git clone failed from git.bioconductor.org Oct 2, 2017 Turaga, Nitesh git clone failed from git.bioconductor.org Oct 2, 2017 Sean Davis git clone failed from git.bioconductor.org Oct 2, 2017

git push problem to bioconductor

1 msg · Oct 13

Riccardo Romoli git push problem to bioconductor Oct 13, 2017

git push to devel versions

2 msgs · Oct 10 – Oct 11

Samuel Wieczorek git push to devel versions Oct 10, 2017 James W. MacDonald git push to devel versions Oct 11, 2017

git svn permissions

2 msgs · Oct 3 – Oct 3

Thomas Lawson git svn permissions Oct 3, 2017 Turaga, Nitesh git svn permissions Oct 3, 2017

how can I contribute to the success of great packages?

3 msgs · Oct 20 – Oct 20

Martin Morgan how can I contribute to the success of great packages? Oct 20, 2017 Dario Strbenac how can I contribute to the success of great packages? Oct 20, 2017 Martin Morgan how can I contribute to the success of great packages? Oct 20, 2017

issues with access to my Bioconductor repository IntramiRExploreR

4 msgs · Oct 26 – Oct 27

Surajit Bhattacharya issues with access to my Bioconductor repository IntramiRExploreR Oct 26, 2017 Shepherd, Lori issues with access to my Bioconductor repository IntramiRExploreR Oct 27, 2017 Surajit Bhattacharya issues with access to my Bioconductor repository IntramiRExploreR Oct 27, 2017 Turaga, Nitesh issues with access to my Bioconductor repository IntramiRExploreR Oct 27, 2017

joining community-bioc slack

2 msgs · Oct 27 – Oct 27

Nathan Olson joining community-bioc slack Oct 27, 2017 Sean Davis joining community-bioc slack Oct 27, 2017

library() calls removed in simpleSingleCell workflow

1 msg · Oct 4

Turaga, Nitesh library() calls removed in simpleSingleCell workflow Oct 4, 2017

library() calls removed in simpleSingleCell workflow

19 msgs · Oct 4 – Oct 12

new package submission (pcxn) Abnormal build result

3 msgs · Oct 2 – Oct 6

Sokratis Kariotis new package submission (pcxn) Abnormal build result Oct 2, 2017 Shepherd, Lori new package submission (pcxn) Abnormal build result Oct 5, 2017 Sokratis Kariotis new package submission (pcxn) Abnormal build result Oct 6, 2017

possible bug in Rhtslib::pkgconfig

3 msgs · Oct 27 – Oct 27

Aaron Lun possible bug in Rhtslib::pkgconfig Oct 27, 2017 Martin Morgan possible bug in Rhtslib::pkgconfig Oct 27, 2017 Aaron Lun possible bug in Rhtslib::pkgconfig Oct 27, 2017

push access to bioconductor repository-reg.

2 msgs · Oct 26 – Oct 26

Turaga, Nitesh push access to bioconductor repository-reg. Oct 26, 2017 Shweta Gopaulakrishnan push access to bioconductor repository-reg. Oct 26, 2017

rcellminer Bioconductor package

5 msgs · Oct 10 – Oct 30

Turaga, Nitesh rcellminer Bioconductor package Oct 10, 2017 Elloumi, Fathi (NIH/NCI) [C] rcellminer Bioconductor package Oct 10, 2017 Elloumi, Fathi (NIH/NCI) [C] rcellminer Bioconductor package Oct 27, 2017 Sean Davis rcellminer Bioconductor package Oct 30, 2017 Elloumi, Fathi (NIH/NCI) [C] rcellminer Bioconductor package Oct 30, 2017

whitespace or or end of line format conflict in git merge

1 msg · Oct 12

Vladislav Petyuk whitespace or or end of line format conflict in git merge Oct 12, 2017

write access to RTNduals and RTNsurvival

6 msgs · Oct 2 – Oct 2

Turaga, Nitesh write access to RTNduals and RTNsurvival Oct 2, 2017 Vinicius Saraiva Chagas write access to RTNduals and RTNsurvival Oct 2, 2017 m castro write access to RTNduals and RTNsurvival Oct 2, 2017 Turaga, Nitesh write access to RTNduals and RTNsurvival Oct 2, 2017 Martin Morgan write access to RTNduals and RTNsurvival Oct 2, 2017 m castro write access to RTNduals and RTNsurvival Oct 2, 2017

Bioc-devel October 2017

"extra" unit tests

Accepted packages can't find each other and fail build

Access to git repository

Adding new maintainer

BIOC devel 3.6 buid/check

Bad SSH key submissions

BioC 3.6: BUILD/CHECK reports are not updating.

BioC 3.6: CHECK report

BioC 3.6: timeouts on veracruz1 (OS X)

Bioc Devel Version issue

BiocGenerics request

Bioconductor 3.6 release: 3.6 branch created

Bioconductor 3.6 release: OrgDb and TxDb annotations

Bioconductor 3.6 release: db0 annotations

Bioconductor 3.6 release: deadline for new packages

Bioconductor 3.6 release: new package deadline

Bioconductor 3.6 release: stop commits to BioC 3.5

Bioconductor 3.6 release: stop commits to git.bioconductor.org

Bioconductor 3.6 release: update NEWS

Bioconductor Git: Online interface

Bioconductor support for explicit SSE vectorization

Build warnings for missing documentation on defunct functions

Can't push to git

Cannot move 'xps' to GIT

Cannot reproduce Bioc build server errors for annotatr package

Cardinal duplicate commits

Changes in 'digest' mode

DOI for packages

Difficulty obtaining access to BioC git repository

Doscheda package edit

Duplicate commit error on and off

EXTERNAL: Adding new maintainer

EXTERNAL: BioC 3.6: timeouts on veracruz1 (OS X)

EXTERNAL: Can't push to git

EXTERNAL: Cardinal duplicate commits

EXTERNAL: Doscheda package edit

EXTERNAL: Fail to push changes on RELEASE_3_5

EXTERNAL: Fetuching Upstream Permission Denied

EXTERNAL: Git access for PhenStat contribute

EXTERNAL: Git push error and duplicate commits

EXTERNAL: Increase timeout for mzR on Windows?

EXTERNAL: Issues of package updating

EXTERNAL: Needs access to devel Git Repository

EXTERNAL: Permission denied (publickey)

EXTERNAL: R version dependence of a new package

EXTERNAL: Unable to push to git

EXTERNAL: Webhooks not working?

EXTERNAL: can not fetch git upstream repository

EXTERNAL: change maintainer of a package

EXTERNAL: error: Could not fetch upstream

EXTERNAL: git push problem to bioconductor

EXTERNAL: git push to devel versions

EXTERNAL: Bioconductor support for explicit SSE vectorization

EXTERNAL: Can't push to git

EXTERNAL: FW: attract problems reported by the "Build/check report" for BioC 3.5

EXTERNAL: Fetuching Upstream Permission Denied

EXTERNAL: Git push error and duplicate commits

EXTERNAL: Increase timeout for mzR on Windows?

EXTERNAL: Landing page not updating version number

EXTERNAL: Permission Denied when pushing to bioc repo

EXTERNAL: Permission denied (publickey) while pushing changes to Github

EXTERNAL: Permission denied (publickey) while pushing changes to Github

EXTERNAL: Permission denied for ImmuneSpaceR repo

EXTERNAL: R version dependence of a new package

EXTERNAL: RE: Failing bioconductor package KEGGprofile

EXTERNAL: Re: Cannot move 'xps' to GIT

EXTERNAL: Re: DOI for packages

EXTERNAL: Re: Enabling SSH keys

EXTERNAL: Re: Git permission denied (publickey)

EXTERNAL: Re: Bioconductor 3.6 release: update NEWS

EXTERNAL: Re: Cannot move 'xps' to GIT

EXTERNAL: Re: Difficulty obtaining access to BioC git repository

EXTERNAL: Re: IMPCdata push permissions to git repo

EXTERNAL: Re: MSnID failing on release and devel

EXTERNAL: Re: MSnID failing on release and devel

EXTERNAL: Re: failing Bioconductor Package groHMM

EXTERNAL: Re: name of git repo for brgedata/BRGEdata package

EXTERNAL: Unexpected message when using 'git commit'

EXTERNAL: Webhooks not working?