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Bioc-devel December 2017

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[Bioc-devel] BiocParallel: fine-grained progress bar
2 msgs
Ludwig Geistlinger BiocParallel: fine-grained progress bar Dec 30, 2017
Martin Morgan BiocParallel: fine-grained progress bar Dec 31, 2017
[Bioc-devel] Long-form documentation for DelayedArray?
1 msg
Gmail Long-form documentation for DelayedArray? Dec 23, 2017
[Bioc-devel] BiocFileCache for developers
12 msgs
Michael Love BiocFileCache for developers Dec 1, 2017
Shepherd, Lori BiocFileCache for developers Dec 1, 2017
Sean Davis BiocFileCache for developers Dec 1, 2017
Shepherd, Lori BiocFileCache for developers Dec 1, 2017
Sean Davis BiocFileCache for developers Dec 1, 2017
Shepherd, Lori BiocFileCache for developers Dec 1, 2017
Michael Love BiocFileCache for developers Dec 1, 2017
Martin Morgan BiocFileCache for developers Dec 1, 2017
Michael Love BiocFileCache for developers Dec 1, 2017
Henrik Bengtsson BiocFileCache for developers Dec 1, 2017
Michael Love BiocFileCache for developers Dec 9, 2017
Shepherd, Lori BiocFileCache for developers Dec 22, 2017
[Bioc-devel] no build reports today
1 msg
Obenchain, Valerie no build reports today Dec 22, 2017
[Bioc-devel] Submit data package or use AnnotationHub?
2 msgs
Steve Lianoglou Submit data package or use AnnotationHub? Dec 21, 2017
Shepherd, Lori Submit data package or use AnnotationHub? Dec 22, 2017
[Bioc-devel] starting a build... but no result...
2 msgs
Paul Brennan starting a build... but no result... Dec 21, 2017
Shepherd, Lori starting a build... but no result... Dec 21, 2017
[Bioc-devel] ensembl 91 gtfs and fasta twobits have been added to AnnotationHub
1 msg
Shepherd, Lori ensembl 91 gtfs and fasta twobits have been added to AnnotationHub Dec 21, 2017
[Bioc-devel] Incrimental writing to HDF5 / DelayedMatrix
5 msgs
Gmail Incrimental writing to HDF5 / DelayedMatrix Dec 21, 2017
Paul Theodor Pyl Incrimental writing to HDF5 / DelayedMatrix Dec 21, 2017
Martin Morgan Incrimental writing to HDF5 / DelayedMatrix Dec 21, 2017
Gmail Incrimental writing to HDF5 / DelayedMatrix Dec 21, 2017
Gmail Incrimental writing to HDF5 / DelayedMatrix Dec 21, 2017
[Bioc-devel] Rsamtools does not export "path"
3 msgs
Ou, Jianhong Rsamtools does not export "path" Dec 18, 2017
Hervé Pagès Rsamtools does not export "path" Dec 19, 2017
Ou, Jianhong Rsamtools does not export "path" Dec 20, 2017
[Bioc-devel] Update in BioMart/ENSEMBL alters coMET
2 msgs
Martin, Tiphaine Update in BioMart/ENSEMBL alters coMET Dec 19, 2017
Markus List Update in BioMart/ENSEMBL alters coMET Dec 20, 2017
[Bioc-devel] fixing 'path' not being exported by 'Rsamtools'
5 msgs
Robert Castelo fixing 'path' not being exported by 'Rsamtools' Dec 19, 2017
Hervé Pagès fixing 'path' not being exported by 'Rsamtools' Dec 19, 2017
Rainer Johannes fixing 'path' not being exported by 'Rsamtools' Dec 19, 2017
Robert Castelo fixing 'path' not being exported by 'Rsamtools' Dec 19, 2017
Hervé Pagès fixing 'path' not being exported by 'Rsamtools' Dec 20, 2017
[Bioc-devel] New Package Submission with external tool dependency
1 msg
Bastian Seelbinder New Package Submission with external tool dependency Dec 19, 2017
[Bioc-devel] release builds
1 msg
Obenchain, Valerie release builds Dec 18, 2017
[Bioc-devel] pthread error with windows platform on tokay2
1 msg
Jiaxing Lin, Ph.D. pthread error with windows platform on tokay2 Dec 18, 2017
[Bioc-devel] Collision with generic function "seed" in DelayedArray.
1 msg
Janssen-10, R.R.E. Collision with generic function "seed" in DelayedArray. Dec 18, 2017
[Bioc-devel] workflow page reorganization
10 msgs
Shepherd, Lori workflow page reorganization Dec 15, 2017
Laurent Gatto workflow page reorganization Dec 15, 2017
Aaron Lun workflow page reorganization Dec 15, 2017
Andrzej Oleś workflow page reorganization Dec 15, 2017
Andrzej Oleś workflow page reorganization Dec 15, 2017
Andrzej Oleś workflow page reorganization Dec 15, 2017
Shepherd, Lori workflow page reorganization Dec 15, 2017
Aaron Lun workflow page reorganization Dec 15, 2017
Michael Love workflow page reorganization Dec 15, 2017
Wolfgang Huber workflow page reorganization Dec 17, 2017
[Bioc-devel] Updating bioconductor after computer transfer - problem
2 msgs
Christopher John Updating bioconductor after computer transfer - problem Dec 14, 2017
Turaga, Nitesh Updating bioconductor after computer transfer - problem Dec 15, 2017
[Bioc-devel] GSE62944, empty EH164 and EH165
3 msgs
Ludwig Geistlinger GSE62944, empty EH164 and EH165 Dec 14, 2017
Shepherd, Lori GSE62944, empty EH164 and EH165 Dec 15, 2017
Ludwig Geistlinger GSE62944, empty EH164 and EH165 Dec 15, 2017
[Bioc-devel] Updated Deprecated Package List for Bioc 3.7
2 msgs
Shepherd, Lori Updated Deprecated Package List for Bioc 3.7 Dec 15, 2017
Ludwig Geistlinger Updated Deprecated Package List for Bioc 3.7 Dec 15, 2017
[Bioc-devel] git push to Bioconductor failing
2 msgs
Hoffman, Gabriel git push to Bioconductor failing Dec 15, 2017
Turaga, Nitesh git push to Bioconductor failing Dec 15, 2017
[Bioc-devel] git push to Bioconductor failing
1 msg
Hoffman, Gabriel git push to Bioconductor failing Dec 15, 2017
[Bioc-devel] SummarizedExperiment: duplication of metadata, when modifying colData
2 msgs
Felix Ernst SummarizedExperiment: duplication of metadata, when modifying colData Dec 12, 2017
Hervé Pagès SummarizedExperiment: duplication of metadata, when modifying colData Dec 14, 2017
[Bioc-devel] unknown build error novel bioc. package
6 msgs
Maarten van Iterson unknown build error novel bioc. package Dec 13, 2017
Marcel Ramos EXTERNAL: unknown build error novel bioc. package Dec 13, 2017
Marcel Ramos unknown build error novel bioc. package Dec 13, 2017
Maarten van Iterson unknown build error novel bioc. package Dec 13, 2017
Marcel Ramos EXTERNAL: Re: unknown build error novel bioc. package Dec 13, 2017
Maarten van Iterson EXTERNAL: Re: unknown build error novel bioc. package Dec 13, 2017
[Bioc-devel] Question about Access to Bioconductor through Git
2 msgs
George Wu Question about Access to Bioconductor through Git Dec 12, 2017
Turaga, Nitesh Question about Access to Bioconductor through Git Dec 13, 2017
[Bioc-devel] Single Package Builder Updates and Testing
2 msgs
Shepherd, Lori Single Package Builder Updates and Testing Dec 11, 2017
Shepherd, Lori Single Package Builder Updates and Testing Dec 13, 2017
[Bioc-devel] splitting simpleSingleCell into self-contained vignettes
9 msgs
Aaron Lun splitting simpleSingleCell into self-contained vignettes Dec 11, 2017
Obenchain, Valerie splitting simpleSingleCell into self-contained vignettes Dec 11, 2017
Aaron Lun splitting simpleSingleCell into self-contained vignettes Dec 11, 2017
Aaron Lun splitting simpleSingleCell into self-contained vignettes Dec 12, 2017
Aaron Lun splitting simpleSingleCell into self-contained vignettes Dec 12, 2017
Andrzej Oleś splitting simpleSingleCell into self-contained vignettes Dec 12, 2017
Aaron Lun splitting simpleSingleCell into self-contained vignettes Dec 12, 2017
Andrzej Oleś splitting simpleSingleCell into self-contained vignettes Dec 12, 2017
Aaron Lun splitting simpleSingleCell into self-contained vignettes Dec 13, 2017
[Bioc-devel] DaMiRseq: error while pushing
3 msgs
Mattia Chiesa DaMiRseq: error while pushing Dec 12, 2017
Turaga, Nitesh DaMiRseq: error while pushing Dec 12, 2017
Mattia Chiesa R: DaMiRseq: error while pushing Dec 12, 2017
[Bioc-devel] Version update question and an error?
2 msgs
Christopher John Version update question and an error? Dec 12, 2017
Shepherd, Lori Version update question and an error? Dec 12, 2017
[Bioc-devel] Fwd: canceR problems reported in the Multiple platform build/check report for BioC 3.6
2 msgs
Karim Mezhoud canceR problems reported in the Multiple platform build/check report for BioC 3.6 Dec 11, 2017
Obenchain, Valerie canceR problems reported in the Multiple platform build/check report for BioC 3.6 Dec 11, 2017
[Bioc-devel] Errors and warnings while submitting package
2 msgs
Eric ... Errors and warnings while submitting package Dec 7, 2017
Shepherd, Lori Errors and warnings while submitting package Dec 11, 2017
[Bioc-devel] parallel processing in R?
3 msgs
Dwivedi, Bhakti parallel processing in R? Dec 11, 2017
Martin Morgan parallel processing in R? Dec 11, 2017
Pariksheet Nanda parallel processing in R? Dec 11, 2017
[Bioc-devel] last check fails on windows server with not reproducible error
2 msgs
Sitte, Maren last check fails on windows server with not reproducible error Dec 11, 2017
Shepherd, Lori last check fails on windows server with not reproducible error Dec 11, 2017
[Bioc-devel] Pandoc issues
1 msg
Vladimir Kiselev Pandoc issues Dec 10, 2017
[Bioc-devel] 'IlluminaHumanMethylation450k.db' package installation
4 msgs
Maryam Hosseini Asanjan 'IlluminaHumanMethylation450k.db' package installation Dec 7, 2017
Martin Morgan 'IlluminaHumanMethylation450k.db' package installation Dec 7, 2017
James W. MacDonald 'IlluminaHumanMethylation450k.db' package installation Dec 7, 2017
Tim Triche, Jr. 'IlluminaHumanMethylation450k.db' package installation Dec 7, 2017
[Bioc-devel] Workflow - missing library in server
1 msg
Tiago Chedraoui Silva Workflow - missing library in server Dec 6, 2017
[Bioc-devel] no OSX repo for R 3.4.3
3 msgs
Federico Calboli no OSX repo for R 3.4.3 Dec 6, 2017
Shepherd, Lori no OSX repo for R 3.4.3 Dec 6, 2017
Shepherd, Lori no OSX repo for R 3.4.3 Dec 6, 2017
[Bioc-devel] mapping between genomic, transcript and protein positions in ensembldb
1 msg
Rainer Johannes mapping between genomic, transcript and protein positions in ensembldb Dec 6, 2017
[Bioc-devel] Pigengene problems reported due to partykit::as.party
2 msgs
Habil Zare Pigengene problems reported due to partykit::as.party Dec 5, 2017
Martin Morgan Pigengene problems reported due to partykit::as.party Dec 6, 2017
[Bioc-devel] Data package timeouts
2 msgs
Leonardo Collado Torres Data package timeouts Dec 5, 2017
Sean Davis Data package timeouts Dec 5, 2017
[Bioc-devel] pushing from github to bioconductor, skipping local machine
3 msgs
Tyler Smith pushing from github to bioconductor, skipping local machine Dec 4, 2017
Turaga, Nitesh pushing from github to bioconductor, skipping local machine Dec 4, 2017
Tyler Smith pushing from github to bioconductor, skipping local machine Dec 4, 2017
[Bioc-devel] packages modifying 'library' during R CMD check
2 msgs
Rainer Johannes packages modifying 'library' during R CMD check Dec 2, 2017
Obenchain, Valerie packages modifying 'library' during R CMD check Dec 4, 2017
[Bioc-devel] cherry picking fixes to release
2 msgs
Michael Lawrence cherry picking fixes to release Dec 3, 2017
Turaga, Nitesh cherry picking fixes to release Dec 4, 2017
[Bioc-devel] a possible bug in development version of GenomicAlignments
1 msg
Hervé Pagès a possible bug in development version of GenomicAlignments Dec 3, 2017
[Bioc-devel] a possible bug in development version of GenomicAlignments
2 msgs
Obenchain, Valerie a possible bug in development version of GenomicAlignments Dec 1, 2017
Ou, Jianhong a possible bug in development version of GenomicAlignments Dec 1, 2017